UCSF
ZINC Item Suppliers, Protomers, & Similar Substances

Analogs

8101191
8101191
8101192
8101192

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Popular Name: Tobramycin Tobramycin

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Vendors

And 3 More

Activity (Go SEA)

Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
Z100263-1-O Ribosomal RNA A-site (cluster #1 Of 1), Other Other 1500 0.25 Binding ≤ 10μM
Q77YF8-1-V Human Immunodeficiency Virus Type 1 REV (cluster #1 Of 1), Viral Viruses 4110 0.24 Functional ≤ 10μM

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) -5.70 -18.36 -415.88 20 14 5 276 472.56 6 ↓
Hi High (pH 8-9.5) -5.70 -19.41 -127.49 17 14 2 271 469.536 6 ↓
Hi High (pH 8-9.5) -5.70 -19.38 -111.17 17 14 2 271 469.536 6 ↓

Analogs

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Popular Name: BEKANAMYCIN SULFATE BEKANAMYCIN SULFATE

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Vendors

Activity (Go SEA)

Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
Z100263-1-O Ribosomal RNA A-site (cluster #1 Of 1), Other Other 1400 0.25 Binding ≤ 10μM
Z50212-7-O Escherichia Coli (cluster #7 Of 7), Other Other 400 0.27 Functional ≤ 10μM

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) -5.82 -21.35 -307.83 20 15 4 295 487.551 6 ↓
Hi High (pH 8-9.5) -5.82 -22.1 -130.72 18 15 2 292 485.535 6 ↓
Hi High (pH 8-9.5) -5.82 -22.05 -114.94 18 15 2 292 485.535 6 ↓

Analogs

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Popular Name: Neamine Neamine

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Vendors

Activity (Go SEA)

Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
TARB1-1-E TAR RNA Binding Protein 1 (cluster #1 Of 1), Eukaryotic Eukaryotes 10000 0.32 Binding ≤ 10μM
TRBP2-1-E TAR RNA Binding Protein 2 (cluster #1 Of 1), Eukaryotic Eukaryotes 10000 0.32 Binding ≤ 10μM
Z100263-1-O Ribosomal RNA A-site (cluster #1 Of 1), Other Other 7800 0.33 Binding ≤ 10μM

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) -5.26 -14.91 -216.63 15 10 3 208 325.386 3 ↓
Hi High (pH 8-9.5) -5.26 -15.78 -44.61 13 10 1 205 323.37 3 ↓
Hi High (pH 8-9.5) -5.26 -15.37 -101.49 14 10 2 207 324.378 3 ↓

Parameters Provided:

target.name = Z100263-1-O
target.type = B10
page.format = summary
page.num = 1
filter.purchasability = purchasable

Structural Results Found: (before additional filtering)

SQL Query Was

SELECT DISTINCT(ci.sub_id_fk) AS sub_id FROM catalog_item AS ci INNER JOIN catalog AS c ON ci.cat_id_fk=c.cat_id INNER JOIN activity AS ac ON ci.sub_id_fk=ac.sub_id_fk INNER JOIN target AS t ON ac.target_fk=t.target_id  WHERE c.free = 1 AND t.code LIKE 'Z100263-1-O' AND t.atype_fk = 0 AND c.purchasable IN (1,2,4,5)    LIMIT 50

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//zinc12.docking.org/results/combination?target.name=Z100263-1-O&target.type=B10&filter.purchasability=purchasable

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