UCSF

ZINC03185216

Substance Information

In ZINC since Heavy atoms Benign functionality
November 7th, 2004 31 Yes

Download: MOL2 SDF SMILES Flexibase

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) 3.73 11.44 -194.38 0 8 -3 155 455.445 7
Lo Low (pH 4.5-6) 3.73 9.46 -111.23 1 8 -2 152 456.453 7

Activity (Go SEA)

Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
APEX1-2-E DNA-(apurinic Or Apyrimidinic Site) Lyase (cluster #2 Of 2), Eukaryotic Eukaryotes 6000 0.24 Binding ≤ 10μM
ChEMBL Target Annotations
Uniprot Swissprot Description Affinity (nM) LE (kcal/mol/atom) Type
APEX1_HUMAN P27695 DNA-(apurinic Or Apyrimidinic Site) Lyase, Human 6000 0.24 Binding ≤ 10μM

Reactome Annotations from Targets (via Uniprot)

Description Species
Base-free sugar-phosphate removal via the single-nucleotide replacement pathway
Displacement of DNA glycosylase by APE1
Removal of DNA patch containing abasic residue
Resolution of AP sites via the multiple-nucleotide patch replacement pathway

Analogs ( Draw Identity 99% 90% 80% 70% )