UCSF

ZINC06920405

Substance Information

In ZINC since Heavy atoms Benign functionality
May 2nd, 2006 34 No

CAS Numbers: 17629-30-0 , 512-69-6 , [512-69-6]

Other Names:

(2S,3R,4S,5S,6R)-2-[[(2R,3R,4S,5R,6R)-6-[(2S,3S,4R,5S)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-3,4,5-trihydroxy-oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol; 512-69-6; 6G-alpha-D-galactosylsucrose; CPD-1099; D-raffinose; alpha-D-Galp-

(3R,4S,5R,6R)-2-{[(2R,3S,4S,5R)-6-{[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol

512-69-6; 6G-alpha-D-galactosylsucrose; C00492; Gossypose; Melitose; Melitriose; Raffinose

6G-alpha-D-galactosylsucrose; 6G-alpha-delta-galactosylsucrose; d-(+)-Raffinose; D-Raffinose; delta-(+)-Raffinose; delta-Raffinose; Gossypose; Melitose; Melitriose; Raffinose; Raffinose hydrate

6G-alpha-D-galactosylsucrose; Gossypose; Melitose; Melitriose; Raffinose; bmse000221

6G-alpha-D-Galactosylsucrose;6G-alpha-delta-Galactosylsucrose;D-(+)-Raffinose;D-Raffinose;delta-(+)-Raffinose;delta-Raffinose;Gossypose;Melitose;Melitriose;Raffinose;Raffinose hydrate

6G-alpha-D-Galactosylsucrose;6G-alpha-delta-Galactosylsucrose;D-(+)-Raffinose;D-Raffinose;Gossypose;Melitose;Melitriose;Raffinose;Raffinose hydrate;delta-(+)-Raffinose;delta-Raffinose

AI3-19427; D-(+)-Raffinose; D-Raffinose; EINECS 208-146-9; Gossypose; LS-71522; Melitose; Melitriose; NSC 170228; NSC 2025; Raffinose; Raffinose, pure; alpha-D-Glucopyranoside, beta-D-fructofuranosyl O-alpha-D-galactopyranosyl (1 to 6)-, hydrate; alpha-D-

alpha-D-Galp-(1->6)-alpha-D-Glcp-(1<->2)-beta-D-Fruf; alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranosyl beta-D-fructofuranoside; raffinose

CHEBI:26521; CHEBI:49843; CHEBI:15015; CHEBI:8771

D(+)-Raffinose pentahydrate

D(+)-Raffinose pentahydrate, 99+%

D-(+)-Raffinose pentahydrate

D-(+)-Raffinose pentahydrate, 99%

Melitose pentahydrate

MFCD00071590

Download: MOL2 SDF SMILES Flexibase

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) -4.90 -23 -18.75 11 16 0 269 504.438 8

Vendor Notes

Note Type Comments Provided By
Mp [°C] 78 - 80.5 Acros Organics
Melting_Point 78-82? Alfa-Aesar
Melting_Point 78-82° Alfa-Aesar
UniProt Database Links ACRB_ASPCL; ACRB_ASPFC; ACRB_ASPFU; ACRB_ASPNC; ACRB_ASPOR; ACRB_ASPTN; ACRB_EMENI; ACRB_NEOFI; AGAL1_PEDPE; AGAL2_HYPJE; AGAL3_HYPJE; AGAL8_EMENI; AGALA_ASPNG; AGALC_EMENI; AGALD_EMENI; AGALG_EMENI; AGAL_ORYSJ; AGAL_SULSO; AMML_ASTMO; CTK1_YEAST; CTK2_YE ChEBI
Patent Database Links EP0806140; EP1308171; EP1310254; EP1512429; EP1516615; EP1516923; EP1537858; EP1557463; EP1561469; EP1627642; EP1647269; EP1669082; EP1792607; EP1820516; EP1825857; EP1887017; EP1911454; EP1923060; EP1944021; US2004006222; US2007184007; US2007185203; US20 ChEBI
S phrase S24/25: Avoid contact with skin and eyes. Acros Organics
PUBCHEM_PATENT_ID US4960877 IBM Patent Data

Activity (Go SEA)

Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
CDK1-2-E Cyclin-dependent Kinase 1 (cluster #2 Of 4), Eukaryotic Eukaryotes 150 0.28 Binding ≤ 10μM
ChEMBL Target Annotations
Uniprot Swissprot Description Affinity (nM) LE (kcal/mol/atom) Type
CDK1_HUMAN P06493 Cyclin-dependent Kinase 1, Human 150 0.28 Binding ≤ 1μM
CDK1_HUMAN P06493 Cyclin-dependent Kinase 1, Human 150 0.28 Binding ≤ 10μM

Reactome Annotations from Targets (via Uniprot)

Description Species
Activation of NIMA Kinases NEK9, NEK6, NEK7
APC/C:Cdc20 mediated degradation of Cyclin B
Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex
Condensation of Prometaphase Chromosomes
Condensation of Prophase Chromosomes
Cyclin A/B1 associated events during G2/M transition
Cyclin B2 mediated events
Depolymerisation of the Nuclear Lamina
E2F mediated regulation of DNA replication
E2F-enabled inhibition of pre-replication complex formation
ERK1 activation
G0 and Early G1
G1/S-Specific Transcription
G2/M DNA replication checkpoint
Golgi Cisternae Pericentriolar Stack Reorganization
Loss of Nlp from mitotic centrosomes
Loss of proteins required for interphase microtubule organization from the ce
MASTL Facilitates Mitotic Progression
Nuclear Pore Complex (NPC) Disassembly
Phosphorylation of Emi1
Phosphorylation of proteins involved in the G2/M transition by Cyclin A:Cdc2 com
Phosphorylation of the APC/C
Recruitment of mitotic centrosome proteins and complexes
Recruitment of NuMA to mitotic centrosomes
Regulation of APC/C activators between G1/S and early anaphase
Regulation of PLK1 Activity at G2/M Transition
Resolution of Sister Chromatid Cohesion

Analogs ( Draw Identity 99% 90% 80% 70% )