UCSF
ZINC Item Suppliers, Protomers, & Similar Substances

Analogs

3871393
3871393
3871392
3871392

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Popular Name: ACTINONIN ACTINONIN

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Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
DEF-1-B Peptide Deformylase (cluster #1 Of 1), Bacterial Bacteria 5 0.43 Binding ≤ 10μM
Q9JN24-1-B Peptide Deformylase (cluster #1 Of 1), Bacterial Bacteria 140 0.36 Binding ≤ 10μM
DEF1A-1-E Peptide Deformylase 1A, Chloroplastic (cluster #1 Of 1), Eukaryotic Eukaryotes 27 0.39 Binding ≤ 10μM
DEFM-1-E Peptide Deformylase Mitochondrial (cluster #1 Of 2), Eukaryotic Eukaryotes 600 0.32 Binding ≤ 10μM
ECE1-1-E Endothelin-converting Enzyme 1 (cluster #1 Of 1), Eukaryotic Eukaryotes 4000 0.28 Binding ≤ 10μM
MMP1-2-E Matrix Metalloproteinase-1 (cluster #2 Of 2), Eukaryotic Eukaryotes 300 0.34 Binding ≤ 10μM
MMP1-2-E Matrix Metalloproteinase-1 (cluster #2 Of 2), Eukaryotic Eukaryotes 1100 0.31 Binding ≤ 10μM
MMP2-1-E 72 KDa Type IV Collagenase (cluster #1 Of 3), Eukaryotic Eukaryotes 3000 0.29 Binding ≤ 10μM
MMP3-1-E Matrix Metalloproteinase 3 (cluster #1 Of 3), Eukaryotic Eukaryotes 1700 0.30 Binding ≤ 10μM
MMP3-1-E Matrix Metalloproteinase 3 (cluster #1 Of 3), Eukaryotic Eukaryotes 6000 0.27 Binding ≤ 10μM
MMP8-1-E Matrix Metalloproteinase 8 (cluster #1 Of 4), Eukaryotic Eukaryotes 190 0.35 Binding ≤ 10μM
MMP9-2-E Matrix Metalloproteinase 9 (cluster #2 Of 3), Eukaryotic Eukaryotes 330 0.34 Binding ≤ 10μM
NEP-2-E Neprilysin (cluster #2 Of 2), Eukaryotic Eukaryotes 8200 0.26 Binding ≤ 10μM
Z50425-6-O Plasmodium Falciparum (cluster #6 Of 22), Other Other 2512 0.29 Functional ≤ 10μM

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) 1.51 2.32 -16.44 4 8 0 119 385.505 11 ↓
Hi High (pH 8-9.5) 1.51 3.4 -55.95 3 8 -1 122 384.497 11 ↓

Analogs

26389613
26389613
26391919
26391919

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Popular Name: (2S,3R)-3-(benzenesulfinyl)-2-hydroxy-heptanehydroxamic (2S,3R)-3-(benzenesulfinyl)-2-hy…

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Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
DEF-1-B Peptide Deformylase (cluster #1 Of 1), Bacterial Bacteria 280 0.48 Binding ≤ 10μM

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) 0.85 2.68 -26.62 3 5 0 87 285.365 7 ↓
Hi High (pH 8-9.5) 0.85 3.9 -66.53 2 5 -1 89 284.357 7 ↓

Analogs

26391919
26391919
13808967
13808967
13808971
13808971

Draw Identity 99% 90% 80% 70%

Popular Name: (2R,3R)-3-(benzenesulfinyl)-2-hydroxy-heptanehydroxamic (2R,3R)-3-(benzenesulfinyl)-2-hy…

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Activity (Go SEA)

Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
DEF-1-B Peptide Deformylase (cluster #1 Of 1), Bacterial Bacteria 280 0.48 Binding ≤ 10μM

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) 0.85 1.42 -24.46 3 5 0 87 285.365 7 ↓
Hi High (pH 8-9.5) 0.85 2.66 -74.39 2 5 -1 89 284.357 7 ↓

Analogs

26389613
26389613
26391919
26391919

Draw Identity 99% 90% 80% 70%

Popular Name: (2R,3S)-3-(benzenesulfinyl)-2-hydroxy-heptanehydroxamic (2R,3S)-3-(benzenesulfinyl)-2-hy…

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Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
DEF-1-B Peptide Deformylase (cluster #1 Of 1), Bacterial Bacteria 7400 0.38 Binding ≤ 10μM

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) 0.85 1.71 -21.98 3 5 0 87 285.365 7 ↓
Hi High (pH 8-9.5) 0.85 2.92 -65.6 2 5 -1 89 284.357 7 ↓

Analogs

26389613
26389613
13808967
13808967
13808971
13808971

Draw Identity 99% 90% 80% 70%

Popular Name: (2S,3S)-3-(benzenesulfinyl)-2-hydroxy-heptanehydroxamic (2S,3S)-3-(benzenesulfinyl)-2-hy…

Find On: PubMed — Wikipedia — Google

Vendors

Activity (Go SEA)

Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
DEF-1-B Peptide Deformylase (cluster #1 Of 1), Bacterial Bacteria 7400 0.38 Binding ≤ 10μM

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) 0.85 1.68 -23.47 3 5 0 87 285.365 7 ↓
Hi High (pH 8-9.5) 0.85 2.92 -51.14 2 5 -1 89 284.357 7 ↓

Analogs

Draw Identity 99% 90% 80% 70%

Popular Name: N-(1-acetyl-2,2-dimethyl-propyl)-2-[(formyl-hydroxy-amino)methyl]hexanamide N-(1-acetyl-2,2-dimethyl-propyl)…

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Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
DEF-1-B Peptide Deformylase (cluster #1 Of 1), Bacterial Bacteria 20 0.51 Binding ≤ 10μM

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) 2.06 1.21 -14.95 2 6 0 86 300.399 9 ↓
Hi High (pH 8-9.5) 2.06 1.71 -57.37 1 6 -1 89 299.391 9 ↓

Parameters Provided:

annotation.name = DEF_ECOLI
anotation.type = B10
page.format = summary
page.num = 1
filter.purchasability = purchasable

Structural Results Found: (before additional filtering)

SQL Query Was

SELECT DISTINCT(ci.sub_id_fk) AS sub_id FROM catalog_item AS ci INNER JOIN catalog AS c ON ci.cat_id_fk=c.cat_id INNER JOIN note AS n ON ci.sub_id_fk=n.sub_id_fk INNER JOIN annotation AS a ON n.anno_id_fk=a.anno_id  WHERE c.free = 1 AND a.short_desc LIKE 'DEF\\_ECOLI' AND c.purchasable IN (1,2,4,5)    LIMIT 50

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