UCSF

ZINC03795098

Substance Information

In ZINC since Heavy atoms Benign functionality
September 26th, 2005 17 Yes

CAS Numbers: 147-94-4 , 65-46-3 , 69-74-9 , [69-74-9]

Other Names:

"Cytosine ¦Â-D-arabinofuranoside, 98%"

(1'R,2'S,3'R,4'R)-4-amino-1-[3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2(1H)-one

(beta-D-Arabinofuranosyl)cytosine

(beta-D-arabinofuranosyl)cytosine;1-Arabinofuranosylcytosine;1-beta -D-Arabinofaranosylcytosine;1-beta -D-Arabinofuranosyl-4-amino-2(1H)pyrimidinone;1-beta -D-Arabinofuranosylcytosine;1-beta-D-Arabinofaranosylcytosine;1-beta-D-Arabinofuranosyl-4-amino-2(1

arabine

1-.beta.-D-arabinofuranosyl-cytosine

1-Arabinofuranosylcytosine

1-Arabinofuranosylcytosine; 1-beta-D-Arabinofaranosylcytosine; 1-beta-D-Arabinofuranosyl-4-amino-2(1H)pyrimidinone; 1-beta-D-Arabinofuranosylcytosine, Cytosine Arabinoside; 1-beta-D-Arabinosylcytosine; 1-beta-D-arabinofuranosylcytosine; 1beta-Arabinofuran

1-beta-D-Arabinofaranosylcytosine

1-beta-D-Arabinofuranosyl-4-amino-2(1H)pyrimidinone

1-beta-D-Arabinofuranosylcytosine

1-beta-D-Arabinofuranosylcytosine hydrochloride; 1-beta-D-Arabinofuranosylcytosine monohydrochloride; 1beta-D-Arabinofuranosylcytosine hydrochloride; 1beta-D-Arabinofuranosylcytosine monohydrochloride; 2(1H)-Pyrimidinone, 4-amino-1-beta-D-arabinofuranosyl

1-beta-D-Arabinofuranosylcytosine, Cytosine Arabinoside

1-beta-D-Arabinofuranosylcytosine; 4-Amino-1-beta-D-arabinofuranosyl-2(1H)-pyrimidinone; cytosine-beta-D-arabinofuranoside

1-beta-D-Arabinosylcytosine

147-94-4

147-94-4; ARA-C; Cytarabine (JP16/USP/INN); D00168; Depocyt (TN)

147-94-4; C02961; Cytarabine; Cytosine arabinoside; Cytosine-1-beta-D-arabinofuranoside

1beta-Arabinofuranasylcytosine

1beta-D-Arabinofuranosylcytosine

1beta-D-Arabinosylcytosine

2(1H)-Pyrimidinone, 4-amino-1- -D-arabinofuranosyl- [CAS]

2(1H)-Pyrimidinone, 4-amino-1- -D-arabinofuranosyl- [CAS]; CPD000449317; SAM001247012

2(1H)-Pyrimidinone, 4-amino-1-.beta.-D-arabinofuranosyl-

2(1H)-Pyrimidinone, 4-amino-1-beta-D-arabinofuranosyl-

2(1H)-Pyrimidinone, 4-amino-1-y-D-arabinofuranosyl- [CAS]; CPD000449317; SAM001247012; cytarabine

2(1H)-Pyrimidinone, 4-amino-1-¦Â-D-arabinofuranosyl-

30399_FLUKA

4-Amino-1-((2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)pyrimidin-2(1H)-one

4-Amino-1-(beta-D-arabinofuranosyl)-2(1H)-pyrimidinone hydrochloride

4-Amino-1-arabinofuranosyl-2-oxo-1,2-dihydropyrimidin

4-Amino-1-arabinofuranosyl-2-oxo-1,2-dihydropyrimidin [Czech]

4-Amino-1-arabinofuranosyl-2-oxo-1,2-dihydropyrimidine

4-Amino-1-b-D-arabinofuranosyl-2-(1H)-pyrimidinone

4-Amino-1-beta-D-arabinofuranosyl-2(1H)-pyrimidinon

4-Amino-1-beta-D-arabinofuranosyl-2(1H)-pyrimidinon [Czech]

4-Amino-1-beta-D-arabinofuranosyl-2(1H)-pyrimidinone

4-amino-1-beta-D-arabinofuranosylpyrimidin-2(1H)-one

4-amino-1-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one

69-74-9 (hydrochloride)

69-74-9; Cytarabine hydrochloride (USAN); D03637

AC-1075

AC1L1M4F

AC1Q52OJ

AI3-52329

Alexan

AR3

Ara-C

Ara-C, Cytosine Arabinoside, Cytosar-U, Cytarabine

Ara-Cytidine

ARABINOCYRIDINE

Arabinocytidine

Arabinofuranosylcytosine

Arabinosyl Cytosine

Arabinosylcytosine

Arabitin

AraC

Aracytidine

Aracytin

Aracytine

Arafcyt

BAN

beta-Ara C

beta-Arabinosylcytosine

Beta-cytosine arabinoside

beta-D-Arabinosylcytosine

BIDD:GT0371

BIDD:PXR0139

BRD-K33106058-001-07-7

BTB15125

C02961

C1768_SIGMA

C2035

C9H13N3O5

CCRIS 913

CHEBI:28680

CHEBI:40824; CHEBI:23532; CHEBI:4074

CHEMBL803

CHX 3311

CID6253

Citarabina

Citarabina [INN-Spanish]

CPD000449317

CPD000449317; 2(1H)-Pyrimidinone, 4-amino-1-ÿ-D-arabinofuranosyl- [CAS]; 147-94-4

Cytarabin

Cytarabina

Cytarabine (BAN

Cytarabine (FDA

Cytarabine (JP15/USP/INN)

CYTARABINE (SEE ALSO CYTARABINE HYDROCHLORIDE 69-74-9)

Cytarabine HCl

Cytarabine hydrochloride

cytarabine liposome injection

Cytarabine [USAN:INN:BAN:JAN]

Cytarabinoside

Cytarabinum

Cytarabinum [INN-Latin]

Cytarbel

Cytartbine

Cytidine

Cytidine, 99%

Cytonal

Cytosar

Cytosar-U

Cytosine 1-beta-D-arabinofuranoside

Cytosine â-D-arabinofuranoside

Cytosine arabinofuranoside

Cytosine arabinose

Cytosine arabinoside

Cytosine arabinoside (VAN)

Cytosine arabinoside hydrochloride

Cytosine beta-D-arabinofuranoside

CYTOSINE BETA-D-ARABINOFURANOSIDE HYDROCHLORIDE

Cytosine beta-D-arabinofuranoside hydrochloride, 99%, crystalline

Cytosine beta-D-arabinofuranoside, 98%

Cytosine beta-D-arabinoside

Cytosine, 1-beta-D-arabinofuranosyl-

Cytosine, 1-beta-D-arabinosyl-

Cytosine, beta-D-arabinoside

Cytosine-1-beta-D-arabinofuranoside

Cytosine-beta-arabinoside

Cytosine-beta-D-arabinofuranoside

Cytosinearabinoside

D00168

DAP000644

DB00987

Depocyt

Depocyt (liposomal)

Depocyt (TN)

DepoCyte

EINECS 205-705-9

Erpalfa

FDA

FT-0082880

HMS2051K19

HMS2090A18

HSDB 3049

INN

Intrathecal (injected into the spinal fluid) DepoCyt

Intrathecal cytarabine (also known as ara-C)

Iretin

JAN

LS-190073

LS-860

MFCD00006545

MFCD00012839

MFCD00066487

MLS000758310

MLS001066340

MolPort-001-792-509

N/A

NCGC00093356-03

NCGC00093356-04

NCGC00093356-05

NCI-C04728

NSC 287459

NSC287459

QB-3403

S1648_Selleck

SAM001247012

SMR000449317

Spongocytidine

SR-01000075773-3

ST-2365

Tarabine

Tarabine PFS

TL8001048

U 19920A

U-19,920

U-19920

U-19920; U-19920A

Udicil

UNII-04079A1RDZ

USAN

USP); Cytarabine HCl (USAN)

USP); Cytarabine Hydrochloride (USAN)

ZINC03795098

Download: MOL2 SDF SMILES Flexibase

Annotations

Vendors

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) -1.93 -7.17 -24.49 5 8 0 131 243.219 2

Vendor Notes

Note Type Comments Provided By
Mp [°C] 197 - 198 Acros Organics
MP 214 TCI
ALOGPS_SOLUBILITY 4.38e+01 g/l DrugBank-approved
Purity 95% Fluorochem
Purity 97% APIChem
Indications antineoplastic, antiviral KeyOrganics Bioactives
Therapy antineoplastic, antiviral, antimetabolite SMDC Pharmakon
Melting_Point ca 215? dec. Alfa-Aesar
Melting_Point ca 215° dec. Alfa-Aesar
UniProt Database Links DCK_HUMAN; KPCD1_HUMAN; KPCD1_MOUSE; KPCD1_RAT; MKNK2_HUMAN ChEBI
PUBCHEM_PATENT_ID EP0339075A1; EP0339075B1; EP0360626A1; EP0934331A2; US4963469; US5190926; US5470838; US5583117; US5677441; US5747319; US5756704; US5916556; WO1989003837A1; WO1998004714A1; WO1998006877A2; WO1998008856A2 IBM Patent Data
Patent Database Links EP0819433; EP1498127; EP1535624; EP1537858; EP1538164; EP1552841; EP1568379; EP1574499; EP1580188; EP1584686; EP1611879; EP1676576; EP1710256; EP1717247; EP1719527; EP1728863; EP1738759; EP1746099; EP1772452; EP1803810; EP1813609; EP1834637; EP1849480; EP ChEBI
H phrase H317: May cause an allergic skin reaction Acros Organics
H phrase H317: May cause an allergic skin reaction; H319: Causes serious eye irritation; H361d: Suspected of damaging the unborn child Acros Organics
Indications leukaemia, antiviral KeyOrganics Bioactives
PUBCHEM_SUBSTANCE_COMMENT NCC_SAMPLE_SUPPLIER : Tocris Cookson Ltd.; NCC_SUPPLIER_STRUCTURE_ID : 101401 NIH Clinical Collection via PubChem
Target Others Selleck Chemicals
P phrase P201: Obtain special instructions before use; P280: Wear protective gloves/protective clothing/eye protection/face protection; P305 + P351 + P338: IF IN EYES: Rinse cautiously with water for several minutes. Remove contact lenses, if present and easy to d Acros Organics
P phrase P280: Wear eye protection/face protection Acros Organics
P phrase P280: Wear eye protection/face protection; P281: Use personal protective equipment as required; P280: Wear protective gloves/protective clothing/eye protection/face protection; P305 + P351 + P338: IF IN EYES: Rinse cautiously with water for several minute Acros Organics
R phrase R36: Irritating to eyes. Acros Organics
R phrase R36: Irritating to eyes.; R43: May cause sensitisation by skin contact.; R63: Possible risk of harm to the unborn child. Acros Organics
S phrase S26: In case of contact with eyes, rinse immediately with plenty of water and seek medical advice. Acros Organics
S phrase S26: In case of contact with eyes, rinse immediately with plenty of water and seek medical advice.; S36/37/39: Wear suitable protective clothing, gloves and eye/face protection. Acros Organics
PUBCHEM_SUBSTANCE_COMMENT SAMPLE_SUPPLIER: Tocris Bioscience; SUPPLIER_STRUCTURE_ID: 101401 NIH Clinical Collection via PubChem
Hazard XN: Harmful Acros Organics

Activity (Go SEA)

Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
Z50515-1-O Human Herpesvirus 2 (cluster #1 Of 2), Other Other 2000 0.47 Functional ≤ 10μM
Z50602-2-O Human Herpesvirus 1 (cluster #2 Of 5), Other Other 300 0.54 Functional ≤ 10μM
Z50643-2-O Hepatitis C Virus (cluster #2 Of 5), Other Other 20 0.63 Functional ≤ 10μM
Z80064-1-O CCRF-CEM (T-cell Leukemia) (cluster #1 Of 9), Other Other 90 0.58 Functional ≤ 10μM
Z80067-1-O CCRF-HSB-2 (T-cell Leukemia Cells) (cluster #1 Of 1), Other Other 150 0.56 Functional ≤ 10μM
Z80100-1-O COLO 320 (Colon Adenocarcinoma Cells) (cluster #1 Of 2), Other Other 40 0.61 Functional ≤ 10μM
Z80156-2-O HL-60 (Promyeloblast Leukemia Cells) (cluster #2 Of 12), Other Other 8000 0.42 Functional ≤ 10μM
Z80164-1-O HT-1080 (Fibrosarcoma Cells) (cluster #1 Of 6), Other Other 530 0.52 Functional ≤ 10μM
Z80166-1-O HT-29 (Colon Adenocarcinoma Cells) (cluster #1 Of 12), Other Other 66 0.59 Functional ≤ 10μM
Z80186-1-O K562 (Erythroleukemia Cells) (cluster #1 Of 11), Other Other 500 0.52 Functional ≤ 10μM
Z80193-2-O L1210 (Lymphocytic Leukemia Cells) (cluster #2 Of 12), Other Other 50 0.60 Functional ≤ 10μM
Z80193-2-O L1210 (Lymphocytic Leukemia Cells) (cluster #2 Of 12), Other Other 100 0.58 Functional ≤ 10μM
Z80224-9-O MCF7 (Breast Carcinoma Cells) (cluster #9 Of 14), Other Other 620 0.51 Functional ≤ 10μM
Z80285-1-O MOLT-4 (Acute T-lymphoblastic Leukemia Cells) (cluster #1 Of 4), Other Other 10 0.66 Functional ≤ 10μM
Z80362-6-O P388 (Lymphoma Cells) (cluster #6 Of 8), Other Other 140 0.56 Functional ≤ 10μM
Z80429-1-O RPMI 6410 (cluster #1 Of 1), Other Other 60 0.59 Functional ≤ 10μM
Z80466-1-O SF268 (cluster #1 Of 4), Other Other 7680 0.42 Functional ≤ 10μM
Z80485-1-O SK-MEL-28 (Melanoma Cells) (cluster #1 Of 6), Other Other 1000 0.49 Functional ≤ 10μM
Z80500-1-O SNB-7 (cluster #1 Of 1), Other Other 1000 0.49 Functional ≤ 10μM
Z80678-1-O AMML Cell Line (cluster #1 Of 1), Other Other 2300 0.46 Functional ≤ 10μM
Z80682-1-O A549 (Lung Carcinoma Cells) (cluster #1 Of 11), Other Other 1900 0.47 Functional ≤ 10μM
Z80712-2-O T47D (Breast Carcinoma Cells) (cluster #2 Of 7), Other Other 2700 0.46 Functional ≤ 10μM
Z80777-1-O CML/BC Cell Line (cluster #1 Of 1), Other Other 210 0.55 Functional ≤ 10μM
Z80874-1-O CEM (T-cell Leukemia) (cluster #1 Of 7), Other Other 24 0.63 Functional ≤ 10μM
Z80928-1-O HCT-116 (Colon Carcinoma Cells) (cluster #1 Of 9), Other Other 5300 0.43 Functional ≤ 10μM
Z81020-1-O HepG2 (Hepatoblastoma Cells) (cluster #1 Of 8), Other Other 200 0.55 Functional ≤ 10μM
Z81077-1-O KATO III Cell Line (cluster #1 Of 1), Other Other 300 0.54 Functional ≤ 10μM
Z81115-2-O KB (Squamous Cell Carcinoma) (cluster #2 Of 6), Other Other 700 0.51 Functional ≤ 10μM
Z81166-1-O LLC Cell Line (cluster #1 Of 1), Other Other 5600 0.43 Functional ≤ 10μM
Z81192-1-O PC-8 (cluster #1 Of 1), Other Other 1100 0.49 Functional ≤ 10μM
Z81193-1-O PC-9 (cluster #1 Of 1), Other Other 6600 0.43 Functional ≤ 10μM
Z81247-1-O HeLa (Cervical Adenocarcinoma Cells) (cluster #1 Of 9), Other Other 260 0.54 Functional ≤ 10μM
Z81281-1-O NCI-H23 (Non-small Cell Lung Carcinoma Cells) (cluster #1 Of 5), Other Other 1000 0.49 Functional ≤ 10μM
ChEMBL Target Annotations
Uniprot Swissprot Description Affinity (nM) LE (kcal/mol/atom) Type
Z80682 Z80682 A549 (Lung Carcinoma Cells) 1900 0.47 Functional ≤ 10μM
Z80678 Z80678 AMML Cell Line 2300 0.46 Functional ≤ 10μM
Z80064 Z80064 CCRF-CEM (T-cell Leukemia) 20 0.63 Functional ≤ 10μM
Z80067 Z80067 CCRF-HSB-2 (T-cell Leukemia Cells) 150 0.56 Functional ≤ 10μM
Z80874 Z80874 CEM (T-cell Leukemia) 24 0.63 Functional ≤ 10μM
Z80777 Z80777 CML/BC Cell Line 210 0.55 Functional ≤ 10μM
Z80100 Z80100 COLO 320 (Colon Adenocarcinoma Cells) 40 0.61 Functional ≤ 10μM
Z80928 Z80928 HCT-116 (Colon Carcinoma Cells) 100 0.58 Functional ≤ 10μM
Z81247 Z81247 HeLa (Cervical Adenocarcinoma Cells) 260 0.54 Functional ≤ 10μM
Z50643 Z50643 Hepatitis C Virus 20 0.63 Functional ≤ 10μM
Z81020 Z81020 HepG2 (Hepatoblastoma Cells) 200 0.55 Functional ≤ 10μM
Z80156 Z80156 HL-60 (Promyeloblast Leukemia Cells) 130 0.57 Functional ≤ 10μM
Z80164 Z80164 HT-1080 (Fibrosarcoma Cells) 530 0.52 Functional ≤ 10μM
Z80166 Z80166 HT-29 (Colon Adenocarcinoma Cells) 66 0.59 Functional ≤ 10μM
Z50602 Z50602 Human Herpesvirus 1 300 0.54 Functional ≤ 10μM
Z50515 Z50515 Human Herpesvirus 2 2000 0.47 Functional ≤ 10μM
Z80186 Z80186 K562 (Erythroleukemia Cells) 50 0.60 Functional ≤ 10μM
Z81077 Z81077 KATO III Cell Line 300 0.54 Functional ≤ 10μM
Z81115 Z81115 KB (Squamous Cell Carcinoma) 640 0.51 Functional ≤ 10μM
Z80193 Z80193 L1210 (Lymphocytic Leukemia Cells) 10 0.66 Functional ≤ 10μM
Z81166 Z81166 LLC Cell Line 5600 0.43 Functional ≤ 10μM
Z80224 Z80224 MCF7 (Breast Carcinoma Cells) 1030 0.49 Functional ≤ 10μM
Z80285 Z80285 MOLT-4 (Acute T-lymphoblastic Leukemia Cells) 10 0.66 Functional ≤ 10μM
Z81281 Z81281 NCI-H23 (Non-small Cell Lung Carcinoma Cells) 1000 0.49 Functional ≤ 10μM
Z80362 Z80362 P388 (Lymphoma Cells) 1233 0.49 Functional ≤ 10μM
Z81192 Z81192 PC-8 1100 0.49 Functional ≤ 10μM
Z81193 Z81193 PC-9 6600 0.43 Functional ≤ 10μM
Z80429 Z80429 RPMI 6410 60 0.59 Functional ≤ 10μM
Z80466 Z80466 SF268 7.68 0.67 Functional ≤ 10μM
Z80485 Z80485 SK-MEL-28 (Melanoma Cells) 1000 0.49 Functional ≤ 10μM
Z80500 Z80500 SNB-7 1000 0.49 Functional ≤ 10μM
Z80712 Z80712 T47D (Breast Carcinoma Cells) 2700 0.46 Functional ≤ 10μM

Analogs ( Draw Identity 99% 90% 80% 70% )