In ZINC since | Heavy atoms | Benign functionality |
---|---|---|
May 9th, 2008 | 22 | Yes |
Popular Name: Tretinoin Tretinoin
Find On: PubMed — Wikipedia — Google
CAS Numbers: , 302-79-4 , 4759-48-2 , [302-79-4]
(2E,4E,6E,8E)-3,7-Dimethyl-9-(2,6,6-trimethyl-cyclohex-1-en-1-yl)nona-2,4,6,8-tetraenoic acid
(2E,4E,6E,8E)-3,7-Dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraenoic acid
3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2E,4E,6E,8E-tetraenoic acid
302-79-4; CPD000058245; Retinoic acid; SAM002264647
302-79-4; Prestwick_424; Retinoic acid
All-trans Retinoic Acid (Tretinoin)
C20H28O2.C7H8O2; LS-178647; MEQUINOL; TRETINOIN; SOLAGE
CPD000058245; Retinoic acid; SAM002264647; trans-Retinoic acid
DIMETHYLTRIMETHYLCYCLOHEXENYLNONATETRAENOICACI
Renova; Retin-A; Retisol-A; Stieva-A; Vesanoid
Tretinoin/All-Trans Retinoic Acid
Vesanoid, Airol, Renova, Atralin, Retin-A, Avita, Stieva-A, all-trans retinoic acid
Type pH range | xlogP | Des A‑Pol Apolar desolvation (kcal/mol) | Des Pol Polar desolvation (kcal/mol) | H Don H-bond donors | H Acc H-bond acceptors | Chg Net charge | tPSA (Ų) | MWT Molecular weight (g/mol) | RB Rotatable bonds | DL |
---|---|---|---|---|---|---|---|---|---|---|
Ref Reference (pH 7) | 5.80 | 11.61 | -54.04 | 0 | 2 | -1 | 40 | 299.434 | 5 | ↓ |
Lo Low (pH 4.5-6) | 5.80 | 11.03 | -5.3 | 1 | 2 | 0 | 37 | 300.442 | 5 | ↓ |
Note Type | Comments | Provided By |
---|---|---|
Mp [°C] | 179 - 184 | Acros Organics |
MP | 180 | TCI |
Melting_Point | 180-182? | Alfa-Aesar |
Melting_Point | 180-182° | Alfa-Aesar |
UniProt Database Links | 2A5B_HUMAN; 2A5D_HUMAN; AB1IP_HUMAN; ACL6B_MOUSE; ADA10_PIG; ADH7_HUMAN; ADH7_MOUSE; ADIG_MOUSE; AGO3_BOVIN; AGO3_HUMAN; AGO3_MOUSE; AHR_HUMAN; AHR_MOUSE; AHR_RAT; AL1A1_BOVIN; AL1A1_CHICK; AL1A1_HORSE; AL1A1_HUMAN; AL1A1_MACFA; AL1A1_MESAU; AL1A1_MOUSE | ChEBI |
Purity | 95+% | Matrix Scientific |
Purity | 98% | Fluorochem |
Patent Database Links | EP0930075; EP1523982; EP1527770; GB2156676; US2004132796; US2005070571; US2005070575; US2005085539; US2006199840; US2007202065; US2007232572; US2008188559; US2008194534 | ChEBI |
H phrase | H312: Harmful in contact with skin | Acros Organics |
H phrase | H312: Harmful in contact with skin; H335: May cause respiratory irritation; H302: Harmful if swallowed; H319: Causes serious eye irritation; H315: Causes skin irritation; H361d: Suspected of damaging the unborn child | Acros Organics |
Warnings | IRRITANT | Matrix Scientific |
Therapy | keratolytic | SMDC Iconix |
therap | keratolytic, antiacne, antineoplastic | MicroSource Spectrum |
PUBCHEM_SUBSTANCE_COMMENT | NCC_SAMPLE_SUPPLIER : LightBiologicals; NCC_SUPPLIER_STRUCTURE_ID : R-8595 | NIH Clinical Collection via PubChem |
Target | Others | Selleck Chemicals |
P phrase | P280: Wear protective gloves/protective clothing/eye protection/face protection | Acros Organics |
P phrase | P280: Wear protective gloves/protective clothing/eye protection/face protection; P281: Use personal protective equipment as required; P302 + P352: IF ON SKIN: Wash with plenty of soap and water; P261: Avoid breathing dust/fume/gas/mist/vapors/spray; P301+ | Acros Organics |
R phrase | R21/22: Harmful in contact with skin and if swallowed. | Acros Organics |
R phrase | R21/22: Harmful in contact with skin and if swallowed.; R36/37/38: Irritating to eyes, respiratory system and skin.; R63: Possible risk of harm to the unborn child. | Acros Organics |
Reactome Database Links | REACT_13550; REACT_13572; REACT_13626 | ChEBI |
Target | Retinoid Receptor | Selleck Chemicals |
S phrase | S26: In case of contact with eyes, rinse immediately with plenty of water and seek medical advice. | Acros Organics |
S phrase | S26: In case of contact with eyes, rinse immediately with plenty of water and seek medical advice.; S36/37/39: Wear suitable protective clothing, gloves and eye/face protection. | Acros Organics |
PUBCHEM_SUBSTANCE_COMMENT | SAMPLE_SUPPLIER: LightBiologicals; SUPPLIER_STRUCTURE_ID: R-8595 | NIH Clinical Collection via PubChem |
Hazard | XN: Harmful | Acros Organics |
Code | Description | Organism Class | Affinity (nM) | LE (kcal/mol/atom) | Type |
---|---|---|---|---|---|
RABP1-1-E | Cellular Retinoic Acid-binding Protein I (cluster #1 Of 1), Eukaryotic | Eukaryotes | 0 | 0.00 | Binding ≤ 10μM |
RABP2-1-E | Cellular Retinoic Acid-binding Protein II (cluster #1 Of 1), Eukaryotic | Eukaryotes | 2 | 0.55 | Binding ≤ 10μM |
RARA-1-E | Retinoic Acid Receptor Alpha (cluster #1 Of 1), Eukaryotic | Eukaryotes | 6 | 0.52 | Binding ≤ 10μM |
RARB-2-E | Retinoic Acid Receptor Beta (cluster #2 Of 2), Eukaryotic | Eukaryotes | 5 | 0.53 | Binding ≤ 10μM |
RARG-2-E | Retinoic Acid Receptor Gamma (cluster #2 Of 2), Eukaryotic | Eukaryotes | 4 | 0.53 | Binding ≤ 10μM |
RXRA-1-E | Retinoid X Receptor Alpha (cluster #1 Of 1), Eukaryotic | Eukaryotes | 82 | 0.45 | Binding ≤ 10μM |
RXRB-2-E | Retinoid X Receptor Beta (cluster #2 Of 2), Eukaryotic | Eukaryotes | 306 | 0.41 | Binding ≤ 10μM |
RXRG-1-E | Retinoid X Receptor Gamma (cluster #1 Of 1), Eukaryotic | Eukaryotes | 350 | 0.41 | Binding ≤ 10μM |
RARA-1-E | Retinoic Acid Receptor Alpha (cluster #1 Of 1), Eukaryotic | Eukaryotes | 7 | 0.52 | Functional ≤ 10μM |
RARB-1-E | Retinoic Acid Receptor Beta (cluster #1 Of 1), Eukaryotic | Eukaryotes | 80 | 0.45 | Functional ≤ 10μM |
RARG-1-E | Retinoic Acid Receptor Gamma (cluster #1 Of 1), Eukaryotic | Eukaryotes | 6 | 0.52 | Functional ≤ 10μM |
RXRA-1-E | Retinoid X Receptor Alpha (cluster #1 Of 1), Eukaryotic | Eukaryotes | 900 | 0.38 | Functional ≤ 10μM |
RXRB-1-E | Retinoid X Receptor Beta (cluster #1 Of 1), Eukaryotic | Eukaryotes | 54 | 0.46 | Functional ≤ 10μM |
RXRG-2-E | Retinoid X Receptor Gamma (cluster #2 Of 2), Eukaryotic | Eukaryotes | 1225 | 0.38 | Functional ≤ 10μM |
Z50518-2-O | Human Herpesvirus 4 (cluster #2 Of 5), Other | Other | 15 | 0.50 | Functional ≤ 10μM |
Z50594-7-O | Mus Musculus (cluster #7 Of 9), Other | Other | 31 | 0.48 | Functional ≤ 10μM |
Z80135-1-O | F9 (cluster #1 Of 1), Other | Other | 200 | 0.43 | Functional ≤ 10μM |
Z80156-5-O | HL-60 (Promyeloblast Leukemia Cells) (cluster #5 Of 12), Other | Other | 5 | 0.53 | Functional ≤ 10μM |
Z80166-10-O | HT-29 (Colon Adenocarcinoma Cells) (cluster #10 Of 12), Other | Other | 4300 | 0.34 | Functional ≤ 10μM |
Z80224-2-O | MCF7 (Breast Carcinoma Cells) (cluster #2 Of 14), Other | Other | 585 | 0.40 | Functional ≤ 10μM |
Z80377-2-O | PaCa2 (cluster #2 Of 2), Other | Other | 9500 | 0.32 | Functional ≤ 10μM |
Z80390-8-O | PC-3 (Prostate Carcinoma Cells) (cluster #8 Of 10), Other | Other | 2000 | 0.36 | Functional ≤ 10μM |
Z80475-1-O | SK-BR-3 (Breast Adenocarcinoma) (cluster #1 Of 3), Other | Other | 2 | 0.55 | Functional ≤ 10μM |
Z80712-1-O | T47D (Breast Carcinoma Cells) (cluster #1 Of 7), Other | Other | 6 | 0.52 | Functional ≤ 10μM |
Z81170-2-O | LNCaP (Prostate Carcinoma) (cluster #2 Of 5), Other | Other | 500 | 0.40 | Functional ≤ 10μM |
Uniprot | Swissprot | Description | Affinity (nM) | LE (kcal/mol/atom) | Type |
---|---|---|---|---|---|
RABP1_MOUSE | P62965 | Cellular Retinoic Acid-binding Protein I, Mouse | 0.4 | 0.60 | Binding ≤ 1μM |
RABP1_CHICK | P40220 | Cellular Retinoic Acid-binding Protein I, Chick | 370 | 0.41 | Binding ≤ 1μM |
RABP2_MOUSE | P22935 | Cellular Retinoic Acid-binding Protein II, Mouse | 2 | 0.55 | Binding ≤ 1μM |
RARA_MOUSE | P11416 | Retinoic Acid Receptor Alpha, Mouse | 15 | 0.50 | Binding ≤ 1μM |
RARA_HUMAN | P10276 | Retinoic Acid Receptor Alpha, Human | 0.1 | 0.64 | Binding ≤ 1μM |
RARB_HUMAN | P10826 | Retinoic Acid Receptor Beta, Human | 0.4 | 0.60 | Binding ≤ 1μM |
RARB_MOUSE | P22605 | Retinoic Acid Receptor Beta, Mouse | 13 | 0.50 | Binding ≤ 1μM |
RARG_HUMAN | P13631 | Retinoic Acid Receptor Gamma, Human | 0.2 | 0.62 | Binding ≤ 1μM |
RARG_MOUSE | P18911 | Retinoic Acid Receptor Gamma, Mouse | 18 | 0.49 | Binding ≤ 1μM |
RXRA_MOUSE | P28700 | Retinoid X Receptor Alpha, Mouse | 1000 | 0.38 | Binding ≤ 1μM |
RXRA_HUMAN | P19793 | Retinoid X Receptor Alpha, Human | 0.4 | 0.60 | Binding ≤ 1μM |
RXRB_MOUSE | P28704 | Retinoid X Receptor Beta, Mouse | 1000 | 0.38 | Binding ≤ 1μM |
RXRB_HUMAN | P28702 | Retinoid X Receptor Beta, Human | 0.5 | 0.59 | Binding ≤ 1μM |
RXRG_HUMAN | P48443 | Retinoid X Receptor Gamma, Human | 1.4 | 0.56 | Binding ≤ 1μM |
RXRG_MOUSE | P28705 | Retinoid X Receptor Gamma, Mouse | 350 | 0.41 | Binding ≤ 1μM |
RABP1_MOUSE | P62965 | Cellular Retinoic Acid-binding Protein I, Mouse | 0.4 | 0.60 | Binding ≤ 10μM |
RABP1_CHICK | P40220 | Cellular Retinoic Acid-binding Protein I, Chick | 370 | 0.41 | Binding ≤ 10μM |
RABP2_MOUSE | P22935 | Cellular Retinoic Acid-binding Protein II, Mouse | 2 | 0.55 | Binding ≤ 10μM |
RARA_MOUSE | P11416 | Retinoic Acid Receptor Alpha, Mouse | 15 | 0.50 | Binding ≤ 10μM |
RARA_HUMAN | P10276 | Retinoic Acid Receptor Alpha, Human | 0.1 | 0.64 | Binding ≤ 10μM |
RARB_MOUSE | P22605 | Retinoic Acid Receptor Beta, Mouse | 13 | 0.50 | Binding ≤ 10μM |
RARB_HUMAN | P10826 | Retinoic Acid Receptor Beta, Human | 0.4 | 0.60 | Binding ≤ 10μM |
RARG_MOUSE | P18911 | Retinoic Acid Receptor Gamma, Mouse | 18 | 0.49 | Binding ≤ 10μM |
RARG_HUMAN | P13631 | Retinoic Acid Receptor Gamma, Human | 0.2 | 0.62 | Binding ≤ 10μM |
RXRA_MOUSE | P28700 | Retinoid X Receptor Alpha, Mouse | 1000 | 0.38 | Binding ≤ 10μM |
RXRA_HUMAN | P19793 | Retinoid X Receptor Alpha, Human | 0.4 | 0.60 | Binding ≤ 10μM |
RXRB_MOUSE | P28704 | Retinoid X Receptor Beta, Mouse | 1000 | 0.38 | Binding ≤ 10μM |
RXRB_HUMAN | P28702 | Retinoid X Receptor Beta, Human | 0.5 | 0.59 | Binding ≤ 10μM |
RXRG_HUMAN | P48443 | Retinoid X Receptor Gamma, Human | 1.4 | 0.56 | Binding ≤ 10μM |
RXRG_MOUSE | P28705 | Retinoid X Receptor Gamma, Mouse | 350 | 0.41 | Binding ≤ 10μM |
Z80135 | Z80135 | F9 | 200 | 0.43 | Functional ≤ 10μM |
Z80156 | Z80156 | HL-60 (Promyeloblast Leukemia Cells) | 5 | 0.53 | Functional ≤ 10μM |
Z80166 | Z80166 | HT-29 (Colon Adenocarcinoma Cells) | 4300 | 0.34 | Functional ≤ 10μM |
Z50518 | Z50518 | Human Herpesvirus 4 | 15.4 | 0.50 | Functional ≤ 10μM |
Z81170 | Z81170 | LNCaP (Prostate Carcinoma) | 10000 | 0.32 | Functional ≤ 10μM |
Z80224 | Z80224 | MCF7 (Breast Carcinoma Cells) | 580 | 0.40 | Functional ≤ 10μM |
Z50594 | Z50594 | Mus Musculus | 31 | 0.48 | Functional ≤ 10μM |
Z80377 | Z80377 | PaCa2 | 9500 | 0.32 | Functional ≤ 10μM |
Z80390 | Z80390 | PC-3 (Prostate Carcinoma Cells) | 2000 | 0.36 | Functional ≤ 10μM |
RARA_HUMAN | P10276 | Retinoic Acid Receptor Alpha, Human | 240 | 0.42 | Functional ≤ 10μM |
RARB_HUMAN | P10826 | Retinoic Acid Receptor Beta, Human | 1 | 0.57 | Functional ≤ 10μM |
RARG_HUMAN | P13631 | Retinoic Acid Receptor Gamma, Human | 0.1 | 0.64 | Functional ≤ 10μM |
RXRA_HUMAN | P19793 | Retinoid X Receptor Alpha, Human | 1084 | 0.38 | Functional ≤ 10μM |
RXRB_HUMAN | P28702 | Retinoid X Receptor Beta, Human | 1394 | 0.37 | Functional ≤ 10μM |
RXRG_HUMAN | P48443 | Retinoid X Receptor Gamma, Human | 1100 | 0.38 | Functional ≤ 10μM |
Z80475 | Z80475 | SK-BR-3 (Breast Adenocarcinoma) | 1.7 | 0.56 | Functional ≤ 10μM |
Z80712 | Z80712 | T47D (Breast Carcinoma Cells) | 200 | 0.43 | Functional ≤ 10μM |
Description | Species |
---|---|
Import of palmitoyl-CoA into the mitochondrial matrix | |
Miscellaneous substrates | |
Regulation of pyruvate dehydrogenase (PDH) complex | |
Vitamins |
Description | Species |
---|---|
Activation of gene expression by SREBF (SREBP) | |
BMAL1:CLOCK,NPAS2 activates circadian gene expression | |
Circadian Clock | |
Endogenous sterols | |
Import of palmitoyl-CoA into the mitochondrial matrix | |
Nuclear Receptor transcription pathway | |
PPARA activates gene expression | |
Recycling of bile acids and salts | |
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alp | |
Regulation of pyruvate dehydrogenase (PDH) complex | |
REV-ERBA represses gene expression | |
RORA activates circadian gene expression | |
Synthesis of bile acids and bile salts | |
Synthesis of bile acids and bile salts via 27-hydroxycholesterol | |
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol | |
Transcriptional activation of mitochondrial biogenesis | |
Transcriptional Regulation of Adipocyte Differentiation in 3T3-L1 Pre-adipocytes | |
Transcriptional regulation of white adipocyte differentiation | |
YAP1- and WWTR1 (TAZ)-stimulated gene expression |