UCSF

ZINC06627681

Substance Information

In ZINC since Heavy atoms Benign functionality
April 10th, 2006 21 Yes

Other Names:

prim

2,4-Diamino-5-(3,4,5-Trimethoxy-Benzyl)-Pyrimidin-1-Ium

2,4-Diamino-5-(3,4,5-Trimethoxybenzyl)Pyrimidine

2,4-DIAMINO-5-(3,4,5-TRIMETHOXYBENZYL)PYRIMIDINE LACTATE

2,4-diamino-5-(3,4,5-trimethoxybenzyl)pyrimidine lactate salt

2,4-Diamino-5-(3,4,5-trimethoxybenzyl)pyrimidine; 2,4-Pyrimidinediamine, 5-((3,4,5-trimethoxyphenyl)-methyl)-; 2,4-Pyrimidinediamine, 5-((3,4,5-trimethoxyphenyl)methyl)-; 5-((3,4,5-Trimethoxyphenyl)methyl)-2,4-pyrimidinediamine; 5-(3,4,5-Trimethoxybenzyl)

2,4-pyrimidinediamine, 5-[(3,4,5-trimethoxyphenyl)methyl]-

23256-42-0; D08644; Trimethoprim lactate; Wellcoprim (TN)

46984_FLUKA

46984_RIEDEL

5-(3,4,5-Trimethoxy-benzyl)-pyrimidine-2,4-diamine

5-(3,4,5-Trimethoxybenzyl)-2,4-pyrimidinediamine

5-(3,4,5-trimethoxybenzyl)pyrimidine-2,4-diamine

5-[(3,4,5-trimethoxyphenyl)methyl]pyrimidine-2,4-diamine

544

56585-33-2; D06236; Trimethoprim sulfate (USP)

738-70-5

738-70-5; C01965; Trimethoprim

738-70-5; D00145; Proloprim (TN); Trimethoprim (JAN/USP/INN); Trimpex (TN)

738-70-5; Prestwick_485; Trimethoprim

8064-90-2; Bactrim (TN); Co-Trimoxazole (BAN); D00285; Septra (TN); Sulfamethoxazole - trimethoprim mixt; Trimethoprim-sulfamethoxazole

92131_FLUKA

92131_SIGMA

A 033; Abacin; Abactrim; Acuco; Agoprim; Alfatrim; Aposulfatrim; Bacteral; Bacterial forte; Bactifor; Bactilen; Bactiver; Bacton; Bactoreduct; Bactramin; Bactrim; Bactrim Forte; Bactrim ds; Bactrizol; Bactromin; Bactropin; Baktar; Baktrisid-DS; Benzenesul

AB00052118

AB1004879

Abacin

Abaprim

AC-13572

AC1L1KNQ

AC1Q48DF

AI3-52594

AKOS001650069

Alcorim-F

Alprim

Anitrim

Antrima

Antrimox

Apo-Sulfatrim

ARONIS24118

AZT + TMP/SMX (mixture) combination

Bacdan

Bacidal

Bacide

Bacin

Bacta

Bacterial

Bacterial [Antibiotic]

Bacticel

Bactin

Bactoprim

Bactramin

Bactrim

Bactrim DS

Bactrim Pediatric

BACTRIM; BACTRIM DS; BACTRIM PEDIATRIC; C14H18N4O3.C10H11N3O3S; COTRIM; COTRIM D.S; LS-178642; SEPTRA; SEPTRA DS; SEPTRA GRAPE; SULFAMETHOPRIM; SULFAMETHOPRIM-DS; SULFAMETHOXAZOLE & TRIMETHOPRIM; SULFAMETHOXAZOLE AND TRIMETHOPRIM; SULFAMETHOXAZOLE AND TRI

Baktar

BAN

BB_SC-2116

Bencole

Benzenesulfonamide, 4-amino-N-(3-methoxypyrazinyl)-, mixt. with 5-((3,4,5-trimethoxyphenyl)methyl)-2,4-pyrimidinediamine; Kelfiprim; LS-31265; Sulfalene + trimethoprim; Sulfalene mixture with trimethoprim; Sulfalene-trimethoprim mixture; Trimed

Benzenesulfonamide, 4-amino-N-(4,5-dimethyl-2-oxazolyl)-, mixt. with 5-((3,4,5-trimethoxyphenyl)methyl)-2,4-pyrimidinediamine; C14H18N4O3.C11H13N3O3S; CN 3123; CN-3123; Co-trifamole; LS-31253; Nevin (mixture); Sulfamoxazole + trimethoprim; Sulfamoxole and

Benzenesulfonamide, 4-amino-N-2-pyrimidinyl-, mixt. with 5-((3,4,5-trimethoxyphenyl)methyl)-2,4-pyrimidinediamine; Co-Trimazine; Diaziprim forte; Ditrim; LS-186738; Sulfadiazine-trimethoprim mixture; Tribrissen; Triglobe; Trimethoprim-sulfadiazine mixture

Bethaprim

BIDD:GT0190

Biosulten

BPBio1_000215

BRD-K07208025-001-06-5

Briscotrim

BRN 0625127

BSPBio_000195

BSPBio_002245

BW 56-72

BW 5672

BW-56-72

BW-56-72; BW-5672; TCMDC-125538; BW-72U

BW-5672; BW-56-72; TCMDC-125538; BW-72U

BW-72U

C01965

CAS-738-70-5

CCRIS 2410

CHEBI:45921; CHEBI:9731

CHEBI:45924

CHEMBL22

Chemotrim

Chemotrin

CID5578

Cidal

Co-Trimoxazole

Co-Trimoxizole

Colizole

Colizole DS

Comox

component of Bactrim

component of Septra

Conprim

Cotrim

Cotrim D.S.

Cotrimel

CPD0-1581

CPD0-1581; trimethoprim

CPD000035999

CPD000035999; Proloprim; SAM002264649; Trimethoprim

CPD000035999; SAM002264649; Trimethoprim

D00145

D014295

DAP000927

DB00440

Deprim

DivK1c_000589

Drylin

Duocide

EINECS 212-006-2

Esbesul

Espectrin

EU-0101271

Euctrim

Eusaprim

Exbesul

FDA

Fectrim

Fermagex

Fortrim

Futin

Gantaprim

Gantrim

HMS1568J17

HMS1921I03

HMS2090D14

HMS2092A10

HMS501N11

HSDB 6781

I06-0086

IDI1_000589

Idotrim

Ikaprim

Imexim

INN

Instalac

Ipral

JAN

KBio1_000589

KBio2_000647

KBio2_003215

KBio2_005783

KBio3_001465

KBioGR_000863

KBioSS_000647

Kepinol

Kombinax

KSC-4-158

KUC103659N

Lagatrim

Lagatrim Forte

Laratrim

Lastrim

Lidaprim

LS-1627

LS-186681

Methoprim

Metoprim

MFCD00036761

MFCD00171722

Microtrim

MLS000079023

MLS001201740

MLS002303068

MolPort-001-826-685

Monoprim

Monotrim

Monotrimin

N/A

NCGC00016055-01

NCGC00016055-02

NCGC00016055-06

NCGC00016055-12

NCGC00024707-01

NCGC00024707-03

NCGC00024707-04

NCGC00024707-05

NCGC00024707-06

NCGC00024707-07

NCGC00024707-08

nchembio.108-comp1

nchembio.215-comp11

nchembio.221-comp23

NIH 204

NIH 204 (VAN)

NINDS_000589

Nopil

Novotrimel

NSC 106568

NSC-106568

NSC106568

Omstat

Oprea1_495058

Oraprim

Pancidim

Polytrim

Prestwick0_000208

Prestwick1_000208

Prestwick2_000208

Prestwick3_000208

Prestwick_485

Priloprim

Primosept

Primsol

Proloprim

Proloprim (TN)

Proloprin

Protrin

Purbal

QA-3343

Resprim

Resprim Forte

Roubac

Roubal

Salvatrim

SAM002264649

Septra

Septra DS

Septra Grape

Septrin

Septrin DS

Septrin Forte

Septrin S

Setprin

Sigaprim

Sinotrim

SMP2_000262

SMR000035999

Smz-Tmp

SPBio_000874

SPBio_002116

SPECTRUM1500595

Spectrum2_000937

Spectrum3_000643

Spectrum4_000372

Spectrum5_001559

Spectrum_000167

STK177322

Stopan

Store at 0-5°C

Streptoplus

Sugaprim

Sulfamar

Sulfamethoprim

Sulfamethoprim-DS

Sulfamethoxazole & Trimethoprim

Sulfatrim

Sulfatrim Pediatric

Sulfatrim-DS

Sulfatrim-SS

Sulfotrim

Sulfoxaprim

Sulmeprim

Sulmeprim Pediatric

Sulprim

Sulthrim

Sultrex

Sumetrolim

Supracombin

Suprim

Syraprim

T 7883

T2286

T7883_SIGMA

TCMDC-125538

Teleprim

Thiocuran

Tiempe

TL8005108

Tmp-Ratiopharm

TMP/SMX (MIXTURE))

Tocris-0650

Toprim

Trigonyl

Trimanyl

Trimesulf

Trimeth/Sulfa

Trimethioprim

Trimethopim(TMP)

Trimethoprim & VRC3375

Trimethoprim (BAN

Trimethoprim (FDA

Trimethoprim (JAN/USP/INN)

Trimethoprim lactate

Trimethoprim lactic acid

Trimethoprim Sulfate

Trimethoprim [738-70-5]

Trimethoprim [USAN:BAN:INN:JAN]

Trimethoprim, 98%

TRIMETHOPRIM; [738-70-5]

Trimethoprime

Trimethoprime [INN-French]

Trimethoprimlactatesalt

Trimethoprimum

Trimethoprimum [INN-Latin]

Trimethopriom

TRIMETHOXYBENZYLPYRIMIDINEDIAMIN

Trimetoprim

Trimetoprim [DCIT]

Trimetoprim [Polish]

Trimetoprima

Trimetoprima [INN-Spanish]

Trimexazole

Trimexol

Trimez-IFSA

Trimezol

Trimogal

Trimono

Trimopan

Trimpex

Trimpex (TN)

Trimpex 200

Triprim

Trisul

Trisulcom

Trisulfam

Trisural

U-Prin

UNII-AN164J8Y0X

Unitrim

UPCMLD-DP132

UPCMLD-DP132:001

Uretrim

Uro-D S

Uro-Septra

Urobactrim

Uroplus

Uroplus DS

Uroplus SS

USAN

USAN)

USP

USP)

USP); Trimethoprim HCl (FDA); Trimethoprim Sulfate (FDA

USP); Trimethoprim Hydrochloride (FDA); Trimethoprim Sulfate (FDA

Utetrin

Velaten

Wellcoprim

Wellcoprin

WLN: T6N CNJ BZ DZ E1R CO1 DO1 EO1

WR 5949

Xeroprim

Zamboprim

ZINC06627681

Download: MOL2 SDF SMILES Flexibase

Annotations

Vendors

Physical Representations

Type pH range xlogP Des A‑Pol Apolar desolvation (kcal/mol) Des Pol Polar desolvation (kcal/mol) H Don H-bond donors H Acc H-bond acceptors Chg Net charge tPSA (Ų) MWT Molecular weight (g/mol) RB Rotatable bonds DL
Ref Reference (pH 7) 1.00 4.4 -13.71 4 7 0 106 290.323 5
Mid Mid (pH 6-8) 1.00 4.89 -42.71 5 7 1 107 291.331 5

Vendor Notes

Note Type Comments Provided By
biological_use Antibacterial agent; Antiseptic ZereneX Building Blocks
Molecular_Solubility 2.971 Bitter DB
M.P 199-203 °C Indofine
ALOGPS_SOLUBILITY 2.83e-01 g/l DrugBank-experimental
MP 202 TCI
ALOGPS_SOLUBILITY 6.15e-01 g/l DrugBank-approved
biological_use Active against common urinary-tract pathogens except for Pseudomonas aeruginosa IBScreen Bioactives
biological_use Active against Haemophilus-influenzae. IBScreen Bioactives
therap antibacterial MicroSource Spectrum
biological_use Antibacterial agent IBScreen Bioactives IBScreen Bioactives
Indications antibiotic KeyOrganics Bioactives
Target Antifection Selleck Chemicals
biological_use Antiseptic IBScreen Bioactives
mechanism Bacterial biosynthesis of nucleic acids and proteins is blocked by interference with normal bacterial metabolism of folinate IBScreen Bioactives
mechanism Binding to bacterial enzyme is stronger than to the corresponding mammalian enzyme IBScreen Bioactives
mechanism Blocks production of tetrahydrofolate from dihydrofolate IBScreen Bioactives
SOLUBILITY DMSO: soluble Indofine
UniProt Database Links DYR10_ECOLX; DYR1_ECOLX; DYR21_ECOLX; DYR22_ECOLX; DYR23_ECOLX; DYR3_SALTM; DYR5_ECOLX; DYR8_ECOLX; DYR8_SHISO; DYR9_ECOLX; DYRA_STAAU; DYR_ECOLI; DYR_HAEIN; DYR_HELVI; DYR_NEIGO; DYR_STAAU; DYR_STAEP; DYR_STAHA; DYR_STRPN; GSHB_ECOLI; MDTK_ECOLI ChEBI
Patent Database Links EP1537858; EP1538164; EP1712220; EP1717247; EP1839648; EP1884520; EP1894559; GB2075833; US2003105066; US2005070552; US2006222684; US2006235023; US2007190067; US2007196519; US2007202077; US2007203079; US2007207222; US2007224243; US2007231406; US2007249545 ChEBI
mechanism Folate antagonist IBScreen Bioactives IBScreen Bioactives
biological_use Inhibits dihydrofolate reductase from bacterial sources and from malaria parasites IBScreen Bioactives
Warnings IRRITANT Matrix Scientific
PUBCHEM_SUBSTANCE_COMMENT NCC_SAMPLE_SUPPLIER : LightBiologicals; NCC_SUPPLIER_STRUCTURE_ID : T-6110 NIH Clinical Collection via PubChem
Target Others Selleck Chemicals
Therapy Potent inhibitor of bacterial and protozoal dihydrofolate reductase SMDC Pharmakon
mechanism Reversible dihydrofolate-reductase-inhibitor IBScreen Bioactives
PUBCHEM_SUBSTANCE_COMMENT SAMPLE_SUPPLIER: LightBiologicals; SUPPLIER_STRUCTURE_ID: T-6110 NIH Clinical Collection via PubChem
Notes This antibiotic is a dihydrofolate reductase inhibitor. It inhibits the conversion of bacterial dihydrofolic acid to tetrahydrofolic acid which is necessary for the synthesisof amino acids, etc. and ; ultimately DNA synthesis. Apollo Scientific Bioactives

Activity (Go SEA)

Clustered Target Annotations
Code Description Organism Class Affinity (nM) LE (kcal/mol/atom) Type
DRTS-1-E Bifunctional Dihydrofolate Reductase-thymidylate Synthase (cluster #1 Of 3), Eukaryotic Eukaryotes 8000 0.34 Binding ≤ 10μM
DYR-1-E Dihydrofolate Reductase (cluster #1 Of 3), Eukaryotic Eukaryotes 500 0.42 Binding ≤ 10μM
KCNH2-5-E HERG (cluster #5 Of 5), Eukaryotic Eukaryotes 3620 0.36 Binding ≤ 10μM
B0BL08-1-B Dihydrofolate Reductase (cluster #1 Of 1), Bacterial Bacteria 10 0.53 Binding ≤ 10μM
DYR-1-B Dihydrofolate Reductase (cluster #1 Of 4), Bacterial Bacteria 2700 0.37 Binding ≤ 10μM
DYR1-1-B Dihydrofolate Reductase Type 1 (cluster #1 Of 1), Bacterial Bacteria 20 0.51 Binding ≤ 10μM
O30463-1-B Dihydrofolate Reductase (cluster #1 Of 1), Bacterial Bacteria 300 0.43 Binding ≤ 10μM
DYR-1-F Dihydrofolate Reductase (cluster #1 Of 1), Fungal Fungi 152 0.45 Binding ≤ 10μM
Z50339-1-O Pneumocystis Carinii (cluster #1 Of 2), Other Other 0 0.00 Functional ≤ 10μM
Z50362-1-O Lactobacillus Casei (cluster #1 Of 1), Other Other 103 0.47 Functional ≤ 10μM
Z50424-1-O Cryptosporidium Parvum (cluster #1 Of 2), Other Other 4000 0.36 Functional ≤ 10μM
Z50425-11-O Plasmodium Falciparum (cluster #11 Of 22), Other Other 9309 0.34 Functional ≤ 10μM
Z50472-1-O Toxoplasma Gondii (cluster #1 Of 4), Other Other 0 0.00 Functional ≤ 10μM
ChEMBL Target Annotations
Uniprot Swissprot Description Affinity (nM) LE (kcal/mol/atom) Type
DYR_STAAU P0A017 Dihydrofolate Reductase, Staau 1.24 0.59 Binding ≤ 1μM
DYR_LACCA P00381 Dihydrofolate Reductase, Lacca 620 0.41 Binding ≤ 1μM
DYR_MOUSE P00375 Dihydrofolate Reductase, Mouse 500 0.42 Binding ≤ 1μM
DYR_HUMAN P00374 Dihydrofolate Reductase, Human 1 0.60 Binding ≤ 1μM
O30463_MYCAV O30463 Dihydrofolate Reductase, Mycav 190 0.45 Binding ≤ 1μM
B0BL08_ECOLX B0BL08 Dihydrofolate Reductase, Ecolx 10 0.53 Binding ≤ 1μM
DYR_PNECA P16184 Dihydrofolate Reductase, Pneca 152 0.45 Binding ≤ 1μM
DRTS_PLAFK P13922 Dihydrofolate Reductase, Plafk 10 0.53 Binding ≤ 1μM
DYR_ECOLI P0ABQ4 Dihydrofolate Reductase, Ecoli 1.3 0.59 Binding ≤ 1μM
DYR1_ECOLX P00382 Dihydrofolate Reductase Type 1, Ecolx 10 0.53 Binding ≤ 1μM
DRTS_PLAFK P13922 Dihydrofolate Reductase, Plafk 10 0.53 Binding ≤ 10μM
DYR_ECOLI P0ABQ4 Dihydrofolate Reductase, Ecoli 1.3 0.59 Binding ≤ 10μM
DYR_STAAU P0A017 Dihydrofolate Reductase, Staau 1.24 0.59 Binding ≤ 10μM
DYR_LACCA P00381 Dihydrofolate Reductase, Lacca 620 0.41 Binding ≤ 10μM
DYR_MOUSE P00375 Dihydrofolate Reductase, Mouse 500 0.42 Binding ≤ 10μM
DYR_HUMAN P00374 Dihydrofolate Reductase, Human 1 0.60 Binding ≤ 10μM
O30463_MYCAV O30463 Dihydrofolate Reductase, Mycav 190 0.45 Binding ≤ 10μM
B0BL08_ECOLX B0BL08 Dihydrofolate Reductase, Ecolx 10 0.53 Binding ≤ 10μM
DRTS_TOXGO Q07422 Dihydrofolate Reductase, Toxgo 2700 0.37 Binding ≤ 10μM
DYR_PNECA P16184 Dihydrofolate Reductase, Pneca 152 0.45 Binding ≤ 10μM
DYR1_ECOLX P00382 Dihydrofolate Reductase Type 1, Ecolx 10 0.53 Binding ≤ 10μM
KCNH2_HUMAN Q12809 HERG, Human 3620 0.36 Binding ≤ 10μM
Z50424 Z50424 Cryptosporidium Parvum 4000 0.36 Functional ≤ 10μM
Z50362 Z50362 Lactobacillus Casei 103 0.47 Functional ≤ 10μM
Z50425 Z50425 Plasmodium Falciparum 1096 0.40 Functional ≤ 10μM
Z50339 Z50339 Pneumocystis Carinii 0.1 0.67 Functional ≤ 10μM
Z50472 Z50472 Toxoplasma Gondii 0.1 0.67 Functional ≤ 10μM

Reactome Annotations from Targets (via Uniprot)

Description Species
E2F mediated regulation of DNA replication
G1/S-Specific Transcription
Metabolism of folate and pterines
Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation
Voltage gated Potassium channels

Analogs ( Draw Identity 99% 90% 80% 70% )