In ZINC since | Heavy atoms | Benign functionality |
---|---|---|
April 10th, 2006 | 21 | Yes |
Popular Name: Trimethoprim Trimethoprim
Find On: PubMed — Wikipedia — Google
CAS Numbers: , 23256-42-0 , 56585-33-2 , 738-70-5 , 8064-90-2 , [23256-42-0] , [738-70-5]
2,4-Diamino-5-(3,4,5-Trimethoxy-Benzyl)-Pyrimidin-1-Ium
2,4-Diamino-5-(3,4,5-Trimethoxybenzyl)Pyrimidine
2,4-DIAMINO-5-(3,4,5-TRIMETHOXYBENZYL)PYRIMIDINE LACTATE
2,4-diamino-5-(3,4,5-trimethoxybenzyl)pyrimidine lactate salt
2,4-pyrimidinediamine, 5-[(3,4,5-trimethoxyphenyl)methyl]-
23256-42-0; D08644; Trimethoprim lactate; Wellcoprim (TN)
5-(3,4,5-Trimethoxy-benzyl)-pyrimidine-2,4-diamine
5-(3,4,5-Trimethoxybenzyl)-2,4-pyrimidinediamine
5-(3,4,5-trimethoxybenzyl)pyrimidine-2,4-diamine
5-[(3,4,5-trimethoxyphenyl)methyl]pyrimidine-2,4-diamine
56585-33-2; D06236; Trimethoprim sulfate (USP)
738-70-5; C01965; Trimethoprim
738-70-5; D00145; Proloprim (TN); Trimethoprim (JAN/USP/INN); Trimpex (TN)
738-70-5; Prestwick_485; Trimethoprim
AZT + TMP/SMX (mixture) combination
BW-56-72; BW-5672; TCMDC-125538; BW-72U
BW-5672; BW-56-72; TCMDC-125538; BW-72U
CPD000035999; Proloprim; SAM002264649; Trimethoprim
CPD000035999; SAM002264649; Trimethoprim
Sulfamethoxazole & Trimethoprim
Trimethoprim [USAN:BAN:INN:JAN]
TRIMETHOXYBENZYLPYRIMIDINEDIAMIN
USP); Trimethoprim HCl (FDA); Trimethoprim Sulfate (FDA
USP); Trimethoprim Hydrochloride (FDA); Trimethoprim Sulfate (FDA
Type pH range | xlogP | Des A‑Pol Apolar desolvation (kcal/mol) | Des Pol Polar desolvation (kcal/mol) | H Don H-bond donors | H Acc H-bond acceptors | Chg Net charge | tPSA (Ų) | MWT Molecular weight (g/mol) | RB Rotatable bonds | DL |
---|---|---|---|---|---|---|---|---|---|---|
Ref Reference (pH 7) | 1.00 | 4.4 | -13.71 | 4 | 7 | 0 | 106 | 290.323 | 5 | ↓ |
Mid Mid (pH 6-8) | 1.00 | 4.89 | -42.71 | 5 | 7 | 1 | 107 | 291.331 | 5 | ↓ |
Note Type | Comments | Provided By |
---|---|---|
biological_use | Antibacterial agent; Antiseptic | ZereneX Building Blocks |
Molecular_Solubility | 2.971 | Bitter DB |
M.P | 199-203 °C | Indofine |
ALOGPS_SOLUBILITY | 2.83e-01 g/l | DrugBank-experimental |
MP | 202 | TCI |
ALOGPS_SOLUBILITY | 6.15e-01 g/l | DrugBank-approved |
biological_use | Active against common urinary-tract pathogens except for Pseudomonas aeruginosa | IBScreen Bioactives |
biological_use | Active against Haemophilus-influenzae. | IBScreen Bioactives |
therap | antibacterial | MicroSource Spectrum |
biological_use | Antibacterial agent | IBScreen Bioactives IBScreen Bioactives |
Indications | antibiotic | KeyOrganics Bioactives |
Target | Antifection | Selleck Chemicals |
biological_use | Antiseptic | IBScreen Bioactives |
mechanism | Bacterial biosynthesis of nucleic acids and proteins is blocked by interference with normal bacterial metabolism of folinate | IBScreen Bioactives |
mechanism | Binding to bacterial enzyme is stronger than to the corresponding mammalian enzyme | IBScreen Bioactives |
mechanism | Blocks production of tetrahydrofolate from dihydrofolate | IBScreen Bioactives |
SOLUBILITY | DMSO: soluble | Indofine |
UniProt Database Links | DYR10_ECOLX; DYR1_ECOLX; DYR21_ECOLX; DYR22_ECOLX; DYR23_ECOLX; DYR3_SALTM; DYR5_ECOLX; DYR8_ECOLX; DYR8_SHISO; DYR9_ECOLX; DYRA_STAAU; DYR_ECOLI; DYR_HAEIN; DYR_HELVI; DYR_NEIGO; DYR_STAAU; DYR_STAEP; DYR_STAHA; DYR_STRPN; GSHB_ECOLI; MDTK_ECOLI | ChEBI |
Patent Database Links | EP1537858; EP1538164; EP1712220; EP1717247; EP1839648; EP1884520; EP1894559; GB2075833; US2003105066; US2005070552; US2006222684; US2006235023; US2007190067; US2007196519; US2007202077; US2007203079; US2007207222; US2007224243; US2007231406; US2007249545 | ChEBI |
mechanism | Folate antagonist | IBScreen Bioactives IBScreen Bioactives |
biological_use | Inhibits dihydrofolate reductase from bacterial sources and from malaria parasites | IBScreen Bioactives |
Warnings | IRRITANT | Matrix Scientific |
PUBCHEM_SUBSTANCE_COMMENT | NCC_SAMPLE_SUPPLIER : LightBiologicals; NCC_SUPPLIER_STRUCTURE_ID : T-6110 | NIH Clinical Collection via PubChem |
Target | Others | Selleck Chemicals |
Therapy | Potent inhibitor of bacterial and protozoal dihydrofolate reductase | SMDC Pharmakon |
mechanism | Reversible dihydrofolate-reductase-inhibitor | IBScreen Bioactives |
PUBCHEM_SUBSTANCE_COMMENT | SAMPLE_SUPPLIER: LightBiologicals; SUPPLIER_STRUCTURE_ID: T-6110 | NIH Clinical Collection via PubChem |
Notes | This antibiotic is a dihydrofolate reductase inhibitor. It inhibits the conversion of bacterial dihydrofolic acid to tetrahydrofolic acid which is necessary for the synthesisof amino acids, etc. and ; ultimately DNA synthesis. | Apollo Scientific Bioactives |
Code | Description | Organism Class | Affinity (nM) | LE (kcal/mol/atom) | Type |
---|---|---|---|---|---|
DRTS-1-E | Bifunctional Dihydrofolate Reductase-thymidylate Synthase (cluster #1 Of 3), Eukaryotic | Eukaryotes | 8000 | 0.34 | Binding ≤ 10μM |
DYR-1-E | Dihydrofolate Reductase (cluster #1 Of 3), Eukaryotic | Eukaryotes | 500 | 0.42 | Binding ≤ 10μM |
KCNH2-5-E | HERG (cluster #5 Of 5), Eukaryotic | Eukaryotes | 3620 | 0.36 | Binding ≤ 10μM |
B0BL08-1-B | Dihydrofolate Reductase (cluster #1 Of 1), Bacterial | Bacteria | 10 | 0.53 | Binding ≤ 10μM |
DYR-1-B | Dihydrofolate Reductase (cluster #1 Of 4), Bacterial | Bacteria | 2700 | 0.37 | Binding ≤ 10μM |
DYR1-1-B | Dihydrofolate Reductase Type 1 (cluster #1 Of 1), Bacterial | Bacteria | 20 | 0.51 | Binding ≤ 10μM |
O30463-1-B | Dihydrofolate Reductase (cluster #1 Of 1), Bacterial | Bacteria | 300 | 0.43 | Binding ≤ 10μM |
DYR-1-F | Dihydrofolate Reductase (cluster #1 Of 1), Fungal | Fungi | 152 | 0.45 | Binding ≤ 10μM |
Z50339-1-O | Pneumocystis Carinii (cluster #1 Of 2), Other | Other | 0 | 0.00 | Functional ≤ 10μM |
Z50362-1-O | Lactobacillus Casei (cluster #1 Of 1), Other | Other | 103 | 0.47 | Functional ≤ 10μM |
Z50424-1-O | Cryptosporidium Parvum (cluster #1 Of 2), Other | Other | 4000 | 0.36 | Functional ≤ 10μM |
Z50425-11-O | Plasmodium Falciparum (cluster #11 Of 22), Other | Other | 9309 | 0.34 | Functional ≤ 10μM |
Z50472-1-O | Toxoplasma Gondii (cluster #1 Of 4), Other | Other | 0 | 0.00 | Functional ≤ 10μM |
Uniprot | Swissprot | Description | Affinity (nM) | LE (kcal/mol/atom) | Type |
---|---|---|---|---|---|
DYR_STAAU | P0A017 | Dihydrofolate Reductase, Staau | 1.24 | 0.59 | Binding ≤ 1μM |
DYR_LACCA | P00381 | Dihydrofolate Reductase, Lacca | 620 | 0.41 | Binding ≤ 1μM |
DYR_MOUSE | P00375 | Dihydrofolate Reductase, Mouse | 500 | 0.42 | Binding ≤ 1μM |
DYR_HUMAN | P00374 | Dihydrofolate Reductase, Human | 1 | 0.60 | Binding ≤ 1μM |
O30463_MYCAV | O30463 | Dihydrofolate Reductase, Mycav | 190 | 0.45 | Binding ≤ 1μM |
B0BL08_ECOLX | B0BL08 | Dihydrofolate Reductase, Ecolx | 10 | 0.53 | Binding ≤ 1μM |
DYR_PNECA | P16184 | Dihydrofolate Reductase, Pneca | 152 | 0.45 | Binding ≤ 1μM |
DRTS_PLAFK | P13922 | Dihydrofolate Reductase, Plafk | 10 | 0.53 | Binding ≤ 1μM |
DYR_ECOLI | P0ABQ4 | Dihydrofolate Reductase, Ecoli | 1.3 | 0.59 | Binding ≤ 1μM |
DYR1_ECOLX | P00382 | Dihydrofolate Reductase Type 1, Ecolx | 10 | 0.53 | Binding ≤ 1μM |
DRTS_PLAFK | P13922 | Dihydrofolate Reductase, Plafk | 10 | 0.53 | Binding ≤ 10μM |
DYR_ECOLI | P0ABQ4 | Dihydrofolate Reductase, Ecoli | 1.3 | 0.59 | Binding ≤ 10μM |
DYR_STAAU | P0A017 | Dihydrofolate Reductase, Staau | 1.24 | 0.59 | Binding ≤ 10μM |
DYR_LACCA | P00381 | Dihydrofolate Reductase, Lacca | 620 | 0.41 | Binding ≤ 10μM |
DYR_MOUSE | P00375 | Dihydrofolate Reductase, Mouse | 500 | 0.42 | Binding ≤ 10μM |
DYR_HUMAN | P00374 | Dihydrofolate Reductase, Human | 1 | 0.60 | Binding ≤ 10μM |
O30463_MYCAV | O30463 | Dihydrofolate Reductase, Mycav | 190 | 0.45 | Binding ≤ 10μM |
B0BL08_ECOLX | B0BL08 | Dihydrofolate Reductase, Ecolx | 10 | 0.53 | Binding ≤ 10μM |
DRTS_TOXGO | Q07422 | Dihydrofolate Reductase, Toxgo | 2700 | 0.37 | Binding ≤ 10μM |
DYR_PNECA | P16184 | Dihydrofolate Reductase, Pneca | 152 | 0.45 | Binding ≤ 10μM |
DYR1_ECOLX | P00382 | Dihydrofolate Reductase Type 1, Ecolx | 10 | 0.53 | Binding ≤ 10μM |
KCNH2_HUMAN | Q12809 | HERG, Human | 3620 | 0.36 | Binding ≤ 10μM |
Z50424 | Z50424 | Cryptosporidium Parvum | 4000 | 0.36 | Functional ≤ 10μM |
Z50362 | Z50362 | Lactobacillus Casei | 103 | 0.47 | Functional ≤ 10μM |
Z50425 | Z50425 | Plasmodium Falciparum | 1096 | 0.40 | Functional ≤ 10μM |
Z50339 | Z50339 | Pneumocystis Carinii | 0.1 | 0.67 | Functional ≤ 10μM |
Z50472 | Z50472 | Toxoplasma Gondii | 0.1 | 0.67 | Functional ≤ 10μM |
Description | Species |
---|---|
E2F mediated regulation of DNA replication | |
G1/S-Specific Transcription | |
Metabolism of folate and pterines | |
Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation | |
Voltage gated Potassium channels |