In ZINC since | Heavy atoms | Benign functionality |
---|---|---|
November 10th, 2008 | 33 | Yes |
Popular Name: SILDENAFIL CITRATE SILDENAFIL CITRATE
Find On: PubMed — Wikipedia — Google
CAS Numbers: 139755-83-2 , 171599-83-0 , [139755-83-2]
139755-83-2; Aphrodil (TN); D08514; Sildenafil (INN)
139755-83-2; C07259; Sildenafil
171599-83-0; D02229; Revatio (TN); Sildenafil citrate (JAN/USAN); Viagra (TN)
Caverta;Revatio;Sildenafil citrate;Viagra
Recombinant human C1 inhibitor
Type pH range | xlogP | Des A‑Pol Apolar desolvation (kcal/mol) | Des Pol Polar desolvation (kcal/mol) | H Don H-bond donors | H Acc H-bond acceptors | Chg Net charge | tPSA (Ų) | MWT Molecular weight (g/mol) | RB Rotatable bonds | DL |
---|---|---|---|---|---|---|---|---|---|---|
Ref Reference (pH 7) | 2.51 | 4.42 | -15.04 | 1 | 10 | 0 | 113 | 474.587 | 7 | ↓ |
Mid Mid (pH 6-8) | 2.51 | 4.17 | -20.18 | 1 | 10 | 0 | 113 | 474.587 | 7 | ↓ |
Mid Mid (pH 6-8) | 2.97 | 2.87 | -54.77 | 0 | 10 | -1 | 117 | 473.579 | 7 | ↓ |
Mid Mid (pH 6-8) | 2.51 | 6.79 | -54.65 | 2 | 10 | 1 | 115 | 475.595 | 7 | ↓ |
Note Type | Comments | Provided By |
---|---|---|
ALOGPS_SOLUBILITY | 4.33e-01 g/l | DrugBank-approved |
Purity | 99% | APIChem |
therap | erectile dysfunction therapy | MicroSource Spectrum |
Therapy | impotency therapy | SMDC Iconix |
Target | PDE | Selleck Chemicals |
UniProt Database Links | PDE11_HUMAN; PDE5A_HUMAN | ChEBI |
mechanism | Selective inhibitor of cyclic GMP specific phosphodiesterase (Type V) | IBScreen Bioactives |
biological_use | Used to treat male erectile dysfunction (impotence) and pulmonary arterial hypertension (PAH) | IBScreen Bioactives |
mechanism | Vasodilator | IBScreen Bioactives IBScreen Bioactives |
Code | Description | Organism Class | Affinity (nM) | LE (kcal/mol/atom) | Type |
---|---|---|---|---|---|
CNCG-1-E | Phosphodiesterase 6H (cluster #1 Of 1), Eukaryotic | Eukaryotes | 50 | 0.31 | Binding ≤ 10μM |
CNRG-1-E | Phosphodiesterase 6G (cluster #1 Of 1), Eukaryotic | Eukaryotes | 50 | 0.31 | Binding ≤ 10μM |
E1BN64-1-E | Phosphodiesterase 3B (cluster #1 Of 2), Eukaryotic | Eukaryotes | 9200 | 0.21 | Binding ≤ 10μM |
KCNH2-1-E | HERG (cluster #1 Of 5), Eukaryotic | Eukaryotes | 5480 | 0.22 | Binding ≤ 10μM |
O77823-1-E | Phosphodiesterase 4A (cluster #1 Of 1), Eukaryotic | Eukaryotes | 4600 | 0.23 | Binding ≤ 10μM |
PDE10-1-E | Phosphodiesterase 10A (cluster #1 Of 1), Eukaryotic | Eukaryotes | 3100 | 0.23 | Binding ≤ 10μM |
PDE11-1-E | Phosphodiesterase 11A (cluster #1 Of 1), Eukaryotic | Eukaryotes | 3000 | 0.23 | Binding ≤ 10μM |
PDE1A-1-E | Phosphodiesterase 1A (cluster #1 Of 1), Eukaryotic | Eukaryotes | 400 | 0.27 | Binding ≤ 10μM |
PDE1B-1-E | Phosphodiesterase 1B (cluster #1 Of 1), Eukaryotic | Eukaryotes | 300 | 0.28 | Binding ≤ 10μM |
PDE1C-1-E | Phosphodiesterase 1C (cluster #1 Of 1), Eukaryotic | Eukaryotes | 300 | 0.28 | Binding ≤ 10μM |
PDE3A-1-E | Phosphodiesterase 3A (cluster #1 Of 2), Eukaryotic | Eukaryotes | 7000 | 0.22 | Binding ≤ 10μM |
PDE3B-1-E | Phosphodiesterase 3B (cluster #1 Of 2), Eukaryotic | Eukaryotes | 7000 | 0.22 | Binding ≤ 10μM |
PDE4A-3-E | Phosphodiesterase 4A (cluster #3 Of 3), Eukaryotic | Eukaryotes | 4600 | 0.23 | Binding ≤ 10μM |
PDE4B-1-E | Phosphodiesterase 4B (cluster #1 Of 2), Eukaryotic | Eukaryotes | 9600 | 0.21 | Binding ≤ 10μM |
PDE4C-1-E | Phosphodiesterase 4C (cluster #1 Of 2), Eukaryotic | Eukaryotes | 9600 | 0.21 | Binding ≤ 10μM |
PDE4D-1-E | Phosphodiesterase 4D (cluster #1 Of 2), Eukaryotic | Eukaryotes | 9600 | 0.21 | Binding ≤ 10μM |
PDE5A-1-E | Phosphodiesterase 5A (cluster #1 Of 2), Eukaryotic | Eukaryotes | 6 | 0.35 | Binding ≤ 10μM |
PDE6A-1-E | Rod CGMP-specific 3',5'-cyclic Phosphodiesterase Subunit Alpha (cluster #1 Of 1), Eukaryotic | Eukaryotes | 50 | 0.31 | Binding ≤ 10μM |
PDE6B-1-E | Phosphodiesterase 6B (cluster #1 Of 1), Eukaryotic | Eukaryotes | 50 | 0.31 | Binding ≤ 10μM |
PDE6C-1-E | Phosphodiesterase 6C (cluster #1 Of 1), Eukaryotic | Eukaryotes | 50 | 0.31 | Binding ≤ 10μM |
PDE6D-1-E | Phosphodiesterase 6D (cluster #1 Of 1), Eukaryotic | Eukaryotes | 74 | 0.30 | Binding ≤ 10μM |
PDE9A-1-E | Phosphodiesterase 9A (cluster #1 Of 1), Eukaryotic | Eukaryotes | 3400 | 0.23 | Binding ≤ 10μM |
Q864F1-1-E | Phosphodiesterase 5 (cluster #1 Of 1), Eukaryotic | Eukaryotes | 11 | 0.34 | Binding ≤ 10μM |
Q9EPR9-1-E | Phosphodiesterase 1A (cluster #1 Of 1), Eukaryotic | Eukaryotes | 300 | 0.28 | Binding ≤ 10μM |
PDE5A-1-E | Phosphodiesterase 5A (cluster #1 Of 1), Eukaryotic | Eukaryotes | 9 | 0.34 | Functional ≤ 10μM |
Q864F1-1-E | Phosphodiesterase 5 (cluster #1 Of 1), Eukaryotic | Eukaryotes | 19 | 0.33 | Functional ≤ 10μM |
Z50590-1-O | Sus Scrofa (cluster #1 Of 1), Other | Other | 38 | 0.31 | Functional ≤ 10μM |
Z50592-1-O | Oryctolagus Cuniculus (cluster #1 Of 8), Other | Other | 8 | 0.34 | Functional ≤ 10μM |
Uniprot | Swissprot | Description | Affinity (nM) | LE (kcal/mol/atom) | Type |
---|---|---|---|---|---|
PDE1A_BOVIN | P14100 | Phosphodiesterase 1A, Bovin | 400 | 0.27 | Binding ≤ 1μM |
PDE1A_HUMAN | P54750 | Phosphodiesterase 1A, Human | 270 | 0.28 | Binding ≤ 1μM |
Q9EPR9_RAT | Q9EPR9 | Phosphodiesterase 1A, Rat | 260 | 0.28 | Binding ≤ 1μM |
PDE1B_RAT | Q01066 | Phosphodiesterase 1B, Rat | 260 | 0.28 | Binding ≤ 1μM |
PDE1B_HUMAN | Q01064 | Phosphodiesterase 1B, Human | 270 | 0.28 | Binding ≤ 1μM |
PDE1B_BOVIN | Q01061 | Phosphodiesterase 1B, Bovin | 400 | 0.27 | Binding ≤ 1μM |
PDE1C_RAT | Q63421 | Phosphodiesterase 1C, Rat | 260 | 0.28 | Binding ≤ 1μM |
PDE1C_HUMAN | Q14123 | Phosphodiesterase 1C, Human | 270 | 0.28 | Binding ≤ 1μM |
Q864F1_PIG | Q864F1 | Phosphodiesterase 5, Pig | 2.2 | 0.37 | Binding ≤ 1μM |
PDE5A_BOVIN | Q28156 | Phosphodiesterase 5A, Bovin | 10 | 0.34 | Binding ≤ 1μM |
PDE5A_HUMAN | O76074 | Phosphodiesterase 5A, Human | 1 | 0.38 | Binding ≤ 1μM |
PDE5A_RAT | O54735 | Phosphodiesterase 5A, Rat | 0.3 | 0.40 | Binding ≤ 1μM |
PDE6A_HUMAN | P16499 | Phosphodiesterase 6A, Human | 25 | 0.32 | Binding ≤ 1μM |
PDE6A_BOVIN | P11541 | Phosphodiesterase 6A, Bovin | 140 | 0.29 | Binding ≤ 1μM |
PDE6B_BOVIN | P23439 | Phosphodiesterase 6B, Bovin | 19.77 | 0.33 | Binding ≤ 1μM |
PDE6B_HUMAN | P35913 | Phosphodiesterase 6B, Human | 25 | 0.32 | Binding ≤ 1μM |
PDE6C_BOVIN | P16586 | Phosphodiesterase 6C, Bovin | 19.77 | 0.33 | Binding ≤ 1μM |
PDE6C_HUMAN | P51160 | Phosphodiesterase 6C, Human | 160 | 0.29 | Binding ≤ 1μM |
PDE6D_HUMAN | O43924 | Phosphodiesterase 6D, Human | 25 | 0.32 | Binding ≤ 1μM |
PDE6D_BOVIN | Q95142 | Phosphodiesterase 6D, Bovin | 19.77 | 0.33 | Binding ≤ 1μM |
CNRG_HUMAN | P18545 | Phosphodiesterase 6G, Human | 25 | 0.32 | Binding ≤ 1μM |
CNRG_BOVIN | P04972 | Phosphodiesterase 6G, Bovin | 19.77 | 0.33 | Binding ≤ 1μM |
CNCG_BOVIN | P22571 | Phosphodiesterase 6H, Bovin | 19.77 | 0.33 | Binding ≤ 1μM |
CNCG_HUMAN | Q13956 | Phosphodiesterase 6H, Human | 25 | 0.32 | Binding ≤ 1μM |
KCNH2_HUMAN | Q12809 | HERG, Human | 3299.97006 | 0.23 | Binding ≤ 10μM |
PDE10_HUMAN | Q9Y233 | Phosphodiesterase 10A, Human | 3100 | 0.23 | Binding ≤ 10μM |
PDE11_HUMAN | Q9HCR9 | Phosphodiesterase 11A, Human | 2300 | 0.24 | Binding ≤ 10μM |
PDE1A_BOVIN | P14100 | Phosphodiesterase 1A, Bovin | 1100 | 0.25 | Binding ≤ 10μM |
Q9EPR9_RAT | Q9EPR9 | Phosphodiesterase 1A, Rat | 260 | 0.28 | Binding ≤ 10μM |
PDE1A_HUMAN | P54750 | Phosphodiesterase 1A, Human | 1100 | 0.25 | Binding ≤ 10μM |
PDE1B_RAT | Q01066 | Phosphodiesterase 1B, Rat | 260 | 0.28 | Binding ≤ 10μM |
PDE1B_HUMAN | Q01064 | Phosphodiesterase 1B, Human | 1100 | 0.25 | Binding ≤ 10μM |
PDE1B_BOVIN | Q01061 | Phosphodiesterase 1B, Bovin | 1100 | 0.25 | Binding ≤ 10μM |
PDE1C_RAT | Q63421 | Phosphodiesterase 1C, Rat | 260 | 0.28 | Binding ≤ 10μM |
PDE1C_HUMAN | Q14123 | Phosphodiesterase 1C, Human | 1100 | 0.25 | Binding ≤ 10μM |
PDE3A_HUMAN | Q14432 | Phosphodiesterase 3A, Human | 7000 | 0.22 | Binding ≤ 10μM |
PDE3B_HUMAN | Q13370 | Phosphodiesterase 3B, Human | 7000 | 0.22 | Binding ≤ 10μM |
E1BN64_BOVIN | E1BN64 | Phosphodiesterase 3B, Bovin | 7000 | 0.22 | Binding ≤ 10μM |
PDE4A_HUMAN | P27815 | Phosphodiesterase 4A, Human | 4600 | 0.23 | Binding ≤ 10μM |
O77823_PIG | O77823 | Phosphodiesterase 4A, Pig | 4600 | 0.23 | Binding ≤ 10μM |
PDE4A_RAT | P54748 | Phosphodiesterase 4A, Rat | 4600 | 0.23 | Binding ≤ 10μM |
PDE4B_HUMAN | Q07343 | Phosphodiesterase 4B, Human | 4600 | 0.23 | Binding ≤ 10μM |
PDE4B_RAT | P14646 | Phosphodiesterase 4B, Rat | 4600 | 0.23 | Binding ≤ 10μM |
PDE4C_HUMAN | Q08493 | Phosphodiesterase 4C, Human | 4600 | 0.23 | Binding ≤ 10μM |
PDE4C_RAT | P14644 | Phosphodiesterase 4C, Rat | 4600 | 0.23 | Binding ≤ 10μM |
PDE4D_HUMAN | Q08499 | Phosphodiesterase 4D, Human | 4600 | 0.23 | Binding ≤ 10μM |
PDE4D_RAT | P14270 | Phosphodiesterase 4D, Rat | 4600 | 0.23 | Binding ≤ 10μM |
Q864F1_PIG | Q864F1 | Phosphodiesterase 5, Pig | 2.2 | 0.37 | Binding ≤ 10μM |
PDE5A_HUMAN | O76074 | Phosphodiesterase 5A, Human | 1 | 0.38 | Binding ≤ 10μM |
PDE5A_RAT | O54735 | Phosphodiesterase 5A, Rat | 0.3 | 0.40 | Binding ≤ 10μM |
PDE5A_BOVIN | Q28156 | Phosphodiesterase 5A, Bovin | 10 | 0.34 | Binding ≤ 10μM |
PDE6A_BOVIN | P11541 | Phosphodiesterase 6A, Bovin | 140 | 0.29 | Binding ≤ 10μM |
PDE6A_HUMAN | P16499 | Phosphodiesterase 6A, Human | 25 | 0.32 | Binding ≤ 10μM |
PDE6B_HUMAN | P35913 | Phosphodiesterase 6B, Human | 25 | 0.32 | Binding ≤ 10μM |
PDE6B_BOVIN | P23439 | Phosphodiesterase 6B, Bovin | 19.77 | 0.33 | Binding ≤ 10μM |
PDE6C_BOVIN | P16586 | Phosphodiesterase 6C, Bovin | 19.77 | 0.33 | Binding ≤ 10μM |
PDE6C_HUMAN | P51160 | Phosphodiesterase 6C, Human | 160 | 0.29 | Binding ≤ 10μM |
PDE6D_BOVIN | Q95142 | Phosphodiesterase 6D, Bovin | 19.77 | 0.33 | Binding ≤ 10μM |
PDE6D_HUMAN | O43924 | Phosphodiesterase 6D, Human | 25 | 0.32 | Binding ≤ 10μM |
CNRG_BOVIN | P04972 | Phosphodiesterase 6G, Bovin | 19.77 | 0.33 | Binding ≤ 10μM |
CNRG_HUMAN | P18545 | Phosphodiesterase 6G, Human | 25 | 0.32 | Binding ≤ 10μM |
CNCG_BOVIN | P22571 | Phosphodiesterase 6H, Bovin | 19.77 | 0.33 | Binding ≤ 10μM |
CNCG_HUMAN | Q13956 | Phosphodiesterase 6H, Human | 25 | 0.32 | Binding ≤ 10μM |
PDE9A_HUMAN | O76083 | Phosphodiesterase 9A, Human | 3400 | 0.23 | Binding ≤ 10μM |
Z50592 | Z50592 | Oryctolagus Cuniculus | 19 | 0.33 | Functional ≤ 10μM |
Q864F1_PIG | Q864F1 | Phosphodiesterase 5, Pig | 19 | 0.33 | Functional ≤ 10μM |
PDE5A_HUMAN | O76074 | Phosphodiesterase 5A, Human | 19 | 0.33 | Functional ≤ 10μM |
Z50590 | Z50590 | Sus Scrofa | 38 | 0.31 | Functional ≤ 10μM |
Description | Species |
---|---|
Activation of the phototransduction cascade | |
Ca2+ pathway | |
Cam-PDE 1 activation | |
cGMP effects | |
DARPP-32 events | |
G alpha (s) signalling events | |
Inactivation, recovery and regulation of the phototransduction cascade | |
PDE3B signalling | |
Voltage gated Potassium channels |
No pre-computed analogs available. Try a structural similarity search.